Variant report

Variant	rs73159331
Chromosome Location	chr13:30526623-30526624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30513452..30517431-chr13:30524367..30526986,3	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11147404	0.94[ASN][1000 genomes]
rs11841228	0.87[ASN][1000 genomes]
rs12429187	0.93[ASN][1000 genomes]
rs12429599	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12430579	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12584184	0.94[ASN][1000 genomes]
rs12584938	0.85[ASN][1000 genomes]
rs1359475	0.82[ASN][1000 genomes]
rs2039952	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4769789	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs481209	0.94[ASN][1000 genomes]
rs501259	0.94[ASN][1000 genomes]
rs502203	0.94[ASN][1000 genomes]
rs502944	0.94[ASN][1000 genomes]
rs512583	0.83[ASN][1000 genomes]
rs533219	0.94[ASN][1000 genomes]
rs553661	0.94[ASN][1000 genomes]
rs564388	0.94[ASN][1000 genomes]
rs566495	0.83[ASN][1000 genomes]
rs576712	0.87[ASN][1000 genomes]
rs641826	0.94[ASN][1000 genomes]
rs643508	0.94[ASN][1000 genomes]
rs644413	0.90[ASN][1000 genomes]
rs6490436	0.89[ASN][1000 genomes]
rs6490437	0.89[ASN][1000 genomes]
rs649164	0.84[ASN][1000 genomes]
rs655338	0.94[ASN][1000 genomes]
rs66986978	0.92[ASN][1000 genomes]
rs73159342	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7327777	0.94[ASN][1000 genomes]
rs7332851	0.90[ASN][1000 genomes]
rs7333780	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7334559	0.87[ASN][1000 genomes]
rs7334714	0.87[ASN][1000 genomes]
rs7358905	0.97[ASN][1000 genomes]
rs7982470	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7982637	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7983558	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7990062	0.85[ASN][1000 genomes]
rs9314992	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv510598	chr13:30476386-30542798	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30518600-30528600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr13:30523200-30529400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:30524400-30528200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr13:30524800-30527400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr13:30525800-30528000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr13:30525800-30528200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr13:30526200-30528000	Enhancers	Primary T cells from cord blood	blood
8	chr13:30526200-30528000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr13:30526400-30528000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr13:30526400-30528200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr13:30526600-30527200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr13:30526600-30528000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr13:30526600-30528000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr13:30526600-30528200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr13:30526600-30528200	Enhancers	Primary T helper cells PMA-I stimulated	--

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