Variant report

Variant	rs11841228
Chromosome Location	chr13:30538194-30538195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30538086..30538804-chr13:30688934..30689691,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11147404	0.93[ASN][1000 genomes]
rs12429187	0.92[ASN][1000 genomes]
rs12429599	0.91[ASN][1000 genomes]
rs12430579	0.91[ASN][1000 genomes]
rs12584184	0.93[ASN][1000 genomes]
rs12584938	0.84[ASN][1000 genomes]
rs1359475	0.93[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2039952	0.91[ASN][1000 genomes]
rs4769789	0.83[CHB][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs481209	0.93[ASN][1000 genomes]
rs501259	0.93[ASN][1000 genomes]
rs502203	0.93[ASN][1000 genomes]
rs502944	0.93[ASN][1000 genomes]
rs533219	0.93[ASN][1000 genomes]
rs553661	0.93[ASN][1000 genomes]
rs564388	0.93[ASN][1000 genomes]
rs576712	1.00[ASN][1000 genomes]
rs634413	0.81[CEU][hapmap]
rs641826	0.93[ASN][1000 genomes]
rs643508	0.93[ASN][1000 genomes]
rs644413	0.89[ASN][1000 genomes]
rs6490436	0.96[ASN][1000 genomes]
rs6490437	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs649164	0.93[ASN][1000 genomes]
rs655338	0.93[ASN][1000 genomes]
rs66986978	0.91[ASN][1000 genomes]
rs73159331	0.87[ASN][1000 genomes]
rs73159342	0.91[ASN][1000 genomes]
rs7327777	0.93[ASN][1000 genomes]
rs7332851	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7333780	0.89[ASN][1000 genomes]
rs7334559	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7334714	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7358905	0.90[ASN][1000 genomes]
rs7982470	0.91[ASN][1000 genomes]
rs7982637	0.90[ASN][1000 genomes]
rs7983558	0.91[ASN][1000 genomes]
rs7990062	0.84[ASN][1000 genomes]
rs7994485	0.90[JPT][hapmap]
rs9314990	0.85[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9314991	0.85[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9314992	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9506244	0.85[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9551791	0.91[ASN][1000 genomes]
rs9579507	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv510598	chr13:30476386-30542798	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30537600-30538200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr13:30537600-30538200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:30537800-30538200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr13:30537800-30538200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:30537800-30538200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:30537800-30538600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:30537800-30539200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr13:30537800-30539600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr13:30538000-30538200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:30538000-30538400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr13:30538000-30538400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr13:30538000-30538400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr13:30538000-30539200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell

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