Variant report

Variant	rs7994485
Chromosome Location	chr13:30585789-30585790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12427487	0.80[ASN][1000 genomes]
rs12428518	0.80[ASN][1000 genomes]
rs12428529	0.80[ASN][1000 genomes]
rs2779514	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2794302	0.81[ASN][1000 genomes]
rs4363718	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4569104	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4769799	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs514669	0.82[TSI][hapmap]
rs73161513	0.80[ASN][1000 genomes]
rs7325348	0.98[ASN][1000 genomes]
rs8002871	0.81[EUR][1000 genomes]
rs846837	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs846838	0.89[ASN][1000 genomes]
rs846841	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs846842	0.88[ASN][1000 genomes]
rs846844	0.92[ASN][1000 genomes]
rs9506250	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7994485	FLT3	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30578800-30588200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr13:30580800-30586800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:30581000-30592000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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