Variant report

Variant	rs9506250
Chromosome Location	chr13:30576035-30576036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1122694	0.84[EUR][1000 genomes]
rs2779514	0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4363718	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4569104	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4769798	0.84[EUR][1000 genomes]
rs4769799	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7325348	0.89[ASN][1000 genomes]
rs7994485	0.89[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8002871	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs846837	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs846838	0.81[AFR][1000 genomes]
rs846841	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs846842	0.81[ASN][1000 genomes]
rs846844	0.84[ASN][1000 genomes]
rs9579507	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30569200-30578400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:30569200-30580000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:30569400-30576200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr13:30573400-30577400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr13:30574000-30578000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:30574400-30576400	Weak transcription	HSMMtube	muscle
7	chr13:30574400-30579400	Weak transcription	Spleen	Spleen
8	chr13:30574800-30576200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr13:30574800-30577400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:30576000-30576600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr13:30576000-30577400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:30576000-30577400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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