Variant report

Variant	rs7325348
Chromosome Location	chr13:30584689-30584690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12427487	0.82[ASN][1000 genomes]
rs12428518	0.82[ASN][1000 genomes]
rs12428529	0.82[ASN][1000 genomes]
rs2779514	0.95[ASN][1000 genomes]
rs2794302	0.83[ASN][1000 genomes]
rs4363718	0.94[ASN][1000 genomes]
rs4569104	0.89[ASN][1000 genomes]
rs4769799	0.89[ASN][1000 genomes]
rs639635	0.81[EUR][1000 genomes]
rs73161513	0.82[ASN][1000 genomes]
rs7994485	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs846837	1.00[ASN][1000 genomes]
rs846838	0.90[ASN][1000 genomes]
rs846841	0.98[ASN][1000 genomes]
rs846842	0.88[ASN][1000 genomes]
rs846844	0.94[ASN][1000 genomes]
rs9506250	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30578800-30588200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr13:30580800-30586800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:30581000-30592000	Weak transcription	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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