Variant report

Variant	rs6490437
Chromosome Location	chr13:30529322-30529323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30512486..30516242-chr13:30529306..30532066,3	K562	blood:
2	chr13:30522245..30525192-chr13:30528354..30530435,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11147404	0.90[ASN][1000 genomes]
rs11841228	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12429187	0.89[ASN][1000 genomes]
rs12429599	0.89[ASN][1000 genomes]
rs12430579	0.89[ASN][1000 genomes]
rs12584184	0.90[ASN][1000 genomes]
rs12584938	0.82[ASN][1000 genomes]
rs1359475	0.93[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2039952	0.89[ASN][1000 genomes]
rs4769789	0.84[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs481209	0.90[ASN][1000 genomes]
rs501259	0.90[ASN][1000 genomes]
rs502203	0.90[ASN][1000 genomes]
rs502944	0.90[ASN][1000 genomes]
rs533219	0.90[ASN][1000 genomes]
rs553661	0.90[ASN][1000 genomes]
rs564388	0.90[ASN][1000 genomes]
rs576712	0.97[ASN][1000 genomes]
rs634413	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs641826	0.90[ASN][1000 genomes]
rs643508	0.90[ASN][1000 genomes]
rs644413	0.86[ASN][1000 genomes]
rs646917	0.81[EUR][1000 genomes]
rs6490436	0.98[ASN][1000 genomes]
rs649164	0.91[ASN][1000 genomes]
rs655338	0.90[ASN][1000 genomes]
rs66986978	0.88[ASN][1000 genomes]
rs73159331	0.89[ASN][1000 genomes]
rs73159342	0.88[ASN][1000 genomes]
rs7327777	0.90[ASN][1000 genomes]
rs7332851	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7333780	0.91[ASN][1000 genomes]
rs7334559	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7334714	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7339208	0.81[EUR][1000 genomes]
rs7358905	0.91[ASN][1000 genomes]
rs7982470	0.89[ASN][1000 genomes]
rs7982637	0.87[ASN][1000 genomes]
rs7983558	0.89[ASN][1000 genomes]
rs7990062	0.82[ASN][1000 genomes]
rs7994485	0.90[JPT][hapmap]
rs9314990	0.85[CEU][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9314991	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9314992	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9506244	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9551791	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv510598	chr13:30476386-30542798	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30523200-30529400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:30527600-30529600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr13:30528000-30529600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
4	chr13:30528600-30529400	Bivalent Enhancer	HepG2	liver
5	chr13:30528600-30529600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr13:30528800-30529600	Enhancers	Fetal Intestine Small	intestine
7	chr13:30528800-30530600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr13:30528800-30530600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:30528800-30530800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr13:30528800-30530800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:30529000-30529400	Enhancers	Duodenum Mucosa	Duodenum
12	chr13:30529000-30529600	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr13:30529000-30529600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr13:30529000-30529600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr13:30529000-30529600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr13:30529000-30529600	Enhancers	Liver	Liver
17	chr13:30529000-30529800	Enhancers	Primary T cells fromperipheralblood	blood
18	chr13:30529000-30529800	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr13:30529000-30529800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr13:30529000-30529800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr13:30529000-30531000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr13:30529200-30529600	Enhancers	Primary T cells from cord blood	blood
23	chr13:30529200-30529600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr13:30529200-30529800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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