Variant report

Variant	rs73164094
Chromosome Location	chr3:157885920-157885921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12486445	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12495621	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2176890	0.81[EUR][1000 genomes]
rs2362247	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4542974	0.85[AMR][1000 genomes]
rs55638807	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61244743	0.83[EUR][1000 genomes]
rs73164073	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73164083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73164088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73164089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73166303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73166305	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73166307	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73166311	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73166326	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73166328	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73166334	0.83[EUR][1000 genomes]
rs73166338	0.83[EUR][1000 genomes]
rs73166343	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157843600-157886800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:157846200-157893400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:157846200-157893600	Weak transcription	Aorta	Aorta
4	chr3:157846800-157894400	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:157848000-157888200	Weak transcription	Thymus	Thymus
6	chr3:157848200-157886800	Weak transcription	Ovary	ovary
7	chr3:157849400-157894400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:157850600-157886400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr3:157854600-157911800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:157856200-157894400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr3:157856400-157892400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr3:157860800-157886800	Weak transcription	Left Ventricle	heart
13	chr3:157868200-157916200	Weak transcription	Primary B cells from cord blood	blood
14	chr3:157869400-157887600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:157873200-157902000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:157874000-157889600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr3:157879200-157896000	Weak transcription	Pancreas	Pancrea
18	chr3:157882800-157886800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:157883000-157887200	Enhancers	NHDF-Ad	bronchial
20	chr3:157883200-157887800	Enhancers	Hela-S3	cervix
21	chr3:157883200-157887800	Enhancers	Osteobl	bone
22	chr3:157883400-157887200	Enhancers	HUVEC	blood vessel
23	chr3:157883400-157887800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:157883800-157886600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:157884000-157886600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:157884400-157894800	Weak transcription	Fetal Thymus	thymus
27	chr3:157884800-157887200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr3:157885000-157889000	Weak transcription	Fetal Muscle Leg	muscle
29	chr3:157885200-157887400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:157885200-157887400	Enhancers	HSMM	muscle
31	chr3:157885200-157887600	Enhancers	HSMMtube	muscle
32	chr3:157885200-157887600	Enhancers	NH-A	brain
33	chr3:157885200-157889600	Weak transcription	Psoas Muscle	Psoas
34	chr3:157885400-157886000	ZNF genes & repeats	GM12878-XiMat	blood
35	chr3:157885400-157887000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr3:157885400-157887200	Enhancers	NHEK	skin
37	chr3:157885400-157887600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:157885400-157887600	Enhancers	HMEC	breast
39	chr3:157885400-157887800	Enhancers	Muscle Satellite Cultured Cells	--
40	chr3:157885400-157889000	Enhancers	Stomach Mucosa	stomach
41	chr3:157885600-157886000	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr3:157885600-157886000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr3:157885600-157886000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:157885600-157886000	Enhancers	Esophagus	oesophagus
45	chr3:157885600-157886000	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr3:157885600-157886000	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr3:157885600-157886000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr3:157885600-157886200	Flanking Active TSS	A549	lung
49	chr3:157885600-157886600	Genic enhancers	Dnd41	blood
50	chr3:157885600-157886800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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