Variant report

Variant	rs73166334
Chromosome Location	chr3:157951398-157951399
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157930315..157932972-chr3:157950342..157951863,2	K562	blood:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10513526	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10936130	0.90[EUR][1000 genomes]
rs12486445	0.83[EUR][1000 genomes]
rs12487397	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12487873	0.90[EUR][1000 genomes]
rs12490116	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12491983	0.89[EUR][1000 genomes]
rs12493633	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12493753	0.89[EUR][1000 genomes]
rs12495621	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12496739	0.87[EUR][1000 genomes]
rs12497109	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12497273	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12631828	0.85[EUR][1000 genomes]
rs12631832	0.87[EUR][1000 genomes]
rs12634372	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12634405	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12634483	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12634966	0.90[EUR][1000 genomes]
rs12635395	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12635963	0.90[EUR][1000 genomes]
rs12637243	0.87[EUR][1000 genomes]
rs12637436	0.87[EUR][1000 genomes]
rs12638258	0.89[EUR][1000 genomes]
rs17486183	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17627838	0.89[EUR][1000 genomes]
rs17683721	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17683787	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2140982	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2176890	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2362247	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28781280	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4021884	0.90[EUR][1000 genomes]
rs4432589	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55638807	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55818809	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56019559	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56101139	0.84[EUR][1000 genomes]
rs56303915	0.89[EUR][1000 genomes]
rs59661293	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60463398	0.83[EUR][1000 genomes]
rs60566034	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60921365	0.87[EUR][1000 genomes]
rs61244743	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6806720	0.89[EUR][1000 genomes]
rs73164094	0.83[EUR][1000 genomes]
rs73166303	0.83[EUR][1000 genomes]
rs73166305	0.85[EUR][1000 genomes]
rs73166307	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73166311	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73166326	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73166328	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73166338	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73166343	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73166347	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73166351	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73166352	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73166357	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73166361	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73166362	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73166370	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73166374	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73166375	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73166381	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73166383	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73166386	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73166387	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73166388	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73166390	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73166394	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73166397	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73166399	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73168703	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73168704	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73168713	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73168718	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73168720	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73168737	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73170313	0.90[EUR][1000 genomes]
rs73170316	0.90[EUR][1000 genomes]
rs73170323	0.90[EUR][1000 genomes]
rs73170340	0.90[EUR][1000 genomes]
rs73170342	0.90[EUR][1000 genomes]
rs73170344	0.90[EUR][1000 genomes]
rs73170358	0.90[EUR][1000 genomes]
rs73170365	0.90[EUR][1000 genomes]
rs73170367	0.90[EUR][1000 genomes]
rs73170369	0.90[EUR][1000 genomes]
rs73170394	0.89[EUR][1000 genomes]
rs73170401	0.89[EUR][1000 genomes]
rs73172109	0.89[EUR][1000 genomes]
rs7650062	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs951113	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv916910	chr3:157926799-158183372	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157914200-157984400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:157919200-157958000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr3:157919800-157952800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:157920200-157957000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:157927000-157952600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr3:157927000-157968800	Weak transcription	Psoas Muscle	Psoas
7	chr3:157928200-157956200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr3:157933800-157957200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr3:157935000-157951600	Weak transcription	K562	blood
10	chr3:157935800-157955200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr3:157936800-157962000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:157938000-157956600	Weak transcription	Primary B cells from cord blood	blood
13	chr3:157938200-157959000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:157938200-157961800	Weak transcription	Primary T cells from cord blood	blood
15	chr3:157941400-157955200	Weak transcription	Lung	lung
16	chr3:157944600-157951800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr3:157948200-157970600	Weak transcription	Dnd41	blood
18	chr3:157949400-157970400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr3:157951200-157952200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links