Variant report

Variant	rs73166311
Chromosome Location	chr3:157923769-157923770
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10513526	0.81[EUR][1000 genomes]
rs12486445	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12487397	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12490116	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12493633	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12495621	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497109	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12497273	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12634372	0.82[EUR][1000 genomes]
rs12634405	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12634483	0.81[EUR][1000 genomes]
rs12635395	0.81[EUR][1000 genomes]
rs17486183	0.81[EUR][1000 genomes]
rs17683721	0.83[EUR][1000 genomes]
rs17683787	0.83[EUR][1000 genomes]
rs2140982	0.81[EUR][1000 genomes]
rs2176890	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2362247	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28781280	0.83[EUR][1000 genomes]
rs4432589	0.81[EUR][1000 genomes]
rs55638807	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55818809	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56019559	0.81[EUR][1000 genomes]
rs59661293	0.81[EUR][1000 genomes]
rs60566034	0.81[EUR][1000 genomes]
rs61244743	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73164083	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs73164088	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73164089	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73164094	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73166303	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73166305	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73166307	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73166326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73166328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73166334	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73166338	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73166343	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73166347	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73166351	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73166352	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73166357	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73166361	0.81[EUR][1000 genomes]
rs73166362	0.83[EUR][1000 genomes]
rs73166370	0.83[EUR][1000 genomes]
rs73166374	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73166375	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73166381	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73166383	0.83[EUR][1000 genomes]
rs73166386	0.83[EUR][1000 genomes]
rs73166387	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73166388	0.83[EUR][1000 genomes]
rs73166390	0.83[EUR][1000 genomes]
rs73166394	0.81[EUR][1000 genomes]
rs73166397	0.81[EUR][1000 genomes]
rs73166399	0.81[EUR][1000 genomes]
rs73168703	0.81[EUR][1000 genomes]
rs73168704	0.81[EUR][1000 genomes]
rs73168713	0.81[EUR][1000 genomes]
rs73168718	0.81[EUR][1000 genomes]
rs73168720	0.81[EUR][1000 genomes]
rs73168737	0.81[EUR][1000 genomes]
rs7650062	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs951113	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013391	chr3:157505943-158115553	Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv536775	chr3:157505943-158115553	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002378	chr3:157715428-158673414	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv829768	chr3:157832878-158012070	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877689	chr3:157858930-158133307	Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv1819976	chr3:157923372-157945591	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157914200-157984400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:157917000-157926200	Weak transcription	Ovary	ovary
3	chr3:157918000-157938000	Weak transcription	Left Ventricle	heart
4	chr3:157919200-157923800	Weak transcription	Primary T cells from cord blood	blood
5	chr3:157919200-157958000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr3:157919400-157924000	Weak transcription	Fetal Lung	lung
7	chr3:157919400-157924200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:157919600-157934600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:157919800-157928000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:157919800-157930400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:157919800-157931600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr3:157919800-157952800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:157920000-157935000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr3:157920200-157957000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr3:157920800-157924600	Weak transcription	HSMM	muscle
16	chr3:157921000-157937600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr3:157921200-157926800	Weak transcription	Primary B cells from cord blood	blood
18	chr3:157921200-157936000	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr3:157921600-157924400	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr3:157921600-157926800	Weak transcription	Dnd41	blood
21	chr3:157921600-157936400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr3:157922000-157950000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:157923600-157924200	Enhancers	GM12878-XiMat	blood

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