Variant report

Variant	rs73164309
Chromosome Location	chr22:33452787-33452788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32846948-32860159..22:33452523-33459358	Hela-S3	cervix:
2	chr22:33450128..33453064-chr22:33538436..33541136,2	MCF-7	breast:
3	22:32360288-32405313..22:33452523-33459358	H1-hESC	embryonic stem cell:	embryo
4	22:33030812-33041554..22:33452523-33459358	GM12878	blood:

Variant related genes	Relation type
ENSG00000230866	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000240647	Chromatin interaction
ENSG00000251890	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs137551	1.00[AMR][1000 genomes]
rs137553	1.00[AMR][1000 genomes]
rs241875	1.00[AMR][1000 genomes]
rs55676703	1.00[AMR][1000 genomes]
rs55718026	1.00[AMR][1000 genomes]
rs55756736	1.00[AMR][1000 genomes]
rs55793030	1.00[AMR][1000 genomes]
rs55828224	1.00[AMR][1000 genomes]
rs55893006	1.00[AMR][1000 genomes]
rs56151696	1.00[AMR][1000 genomes]
rs56220039	1.00[AMR][1000 genomes]
rs56235324	1.00[AMR][1000 genomes]
rs56249635	1.00[AMR][1000 genomes]
rs56373657	1.00[AMR][1000 genomes]
rs56377603	1.00[AMR][1000 genomes]
rs73162009	1.00[AMR][1000 genomes]
rs73162011	1.00[AMR][1000 genomes]
rs73162012	1.00[AMR][1000 genomes]
rs73162016	1.00[AMR][1000 genomes]
rs73162022	1.00[AMR][1000 genomes]
rs73162023	1.00[AMR][1000 genomes]
rs73162031	1.00[AMR][1000 genomes]
rs73162035	1.00[AMR][1000 genomes]
rs73162036	1.00[AMR][1000 genomes]
rs73162038	1.00[AMR][1000 genomes]
rs73162044	1.00[AMR][1000 genomes]
rs73162046	1.00[AMR][1000 genomes]
rs73162047	1.00[AMR][1000 genomes]
rs73162048	1.00[AMR][1000 genomes]
rs73162050	1.00[AMR][1000 genomes]
rs73162053	1.00[AMR][1000 genomes]
rs73162057	1.00[AMR][1000 genomes]
rs73162059	1.00[AMR][1000 genomes]
rs73162062	1.00[AMR][1000 genomes]
rs73162063	1.00[AMR][1000 genomes]
rs73162065	1.00[AMR][1000 genomes]
rs73162069	1.00[AMR][1000 genomes]
rs73162072	1.00[AMR][1000 genomes]
rs73162073	1.00[AMR][1000 genomes]
rs73162074	1.00[AMR][1000 genomes]
rs73162075	1.00[AMR][1000 genomes]
rs73162076	1.00[AMR][1000 genomes]
rs73162077	1.00[AMR][1000 genomes]
rs73162081	1.00[AMR][1000 genomes]
rs73162084	1.00[AMR][1000 genomes]
rs73162087	1.00[AMR][1000 genomes]
rs73162092	1.00[AMR][1000 genomes]
rs73162094	1.00[AMR][1000 genomes]
rs73162095	1.00[AMR][1000 genomes]
rs73162096	1.00[AMR][1000 genomes]
rs73162097	1.00[AMR][1000 genomes]
rs73162098	1.00[AMR][1000 genomes]
rs73164332	1.00[EUR][1000 genomes]
rs80694	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1067068	chr22:33452180-33851033	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33448600-33452800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:33449400-33453600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
3	chr22:33450800-33452800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
4	chr22:33450800-33454600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr22:33451200-33453000	Active TSS	Fetal Brain Female	brain
6	chr22:33451200-33454800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
7	chr22:33452000-33453200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
8	chr22:33452200-33452800	Bivalent Enhancer	GM12878-XiMat	blood
9	chr22:33452200-33453000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
10	chr22:33452200-33453200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
11	chr22:33452200-33454800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
12	chr22:33452400-33452800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
13	chr22:33452400-33453000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr22:33452400-33453000	Flanking Active TSS	HepG2	liver
15	chr22:33452400-33453400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
16	chr22:33452400-33453400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
17	chr22:33452400-33453800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr22:33452600-33452800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
19	chr22:33452600-33452800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
20	chr22:33452600-33452800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr22:33452600-33452800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr22:33452600-33454600	Bivalent/Poised TSS	Brain Anterior Caudate	brain

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