Variant report
| Variant | rs73162075 |
|---|---|
| Chromosome Location | chr22:33414359-33414360 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:154)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr22:33414029..33414830-chr22:33605775..33606331,3 | MCF-7 | breast: | |
| 2 | chr22:33413961..33415197-chr22:33598824..33600370,12 | MCF-7 | breast: | |
| 3 | 22:32920308-32927723..22:33412874-33414483 | K562 | blood: | |
| 4 | chr22:33414130..33415076-chr22:33444854..33445742,4 | MCF-7 | breast: | |
| 5 | chr22:33413946..33415146-chr22:33522626..33523535,7 | MCF-7 | breast: | |
| 6 | chr22:33413852..33414538-chr22:33522698..33523447,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SYN3 | TF binding region |
| ENSG00000185666 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:59)
| rs_ID | r2[population] |
|---|---|
| rs137551 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs137553 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs183588 | 1.00[EUR][1000 genomes] |
| rs241875 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55676703 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55718026 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55756736 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55793030 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55828224 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55893006 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56070943 | 1.00[EUR][1000 genomes] |
| rs56151696 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56220039 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56235324 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56249635 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56373657 | 1.00[AMR][1000 genomes] |
| rs56377603 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73158330 | 1.00[EUR][1000 genomes] |
| rs73158350 | 1.00[EUR][1000 genomes] |
| rs73162009 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162011 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162012 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162016 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162022 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162023 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162031 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162035 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162036 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162038 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162044 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162046 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162047 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162048 | 1.00[AMR][1000 genomes] |
| rs73162050 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162053 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162057 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162059 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162062 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162063 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162065 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162069 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162072 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162073 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162074 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162076 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162077 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162081 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162084 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162087 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162088 | 1.00[EUR][1000 genomes] |
| rs73162092 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162094 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162095 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162096 | 1.00[AMR][1000 genomes] |
| rs73162097 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73162098 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73164309 | 1.00[AMR][1000 genomes] |
| rs73164336 | 1.00[EUR][1000 genomes] |
| rs80694 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531568 | chr22:33336868-33480272 | Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv531587 | chr22:33346710-33809338 | Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
| 3 | nsv948523 | chr22:33414164-34098417 | Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 34 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr22:33402600-33419400 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
| 2 | chr22:33402800-33414600 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 3 | chr22:33403000-33420000 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
| 4 | chr22:33403600-33415600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 5 | chr22:33403800-33414600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 6 | chr22:33403800-33417600 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 7 | chr22:33405400-33414600 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 8 | chr22:33406400-33414600 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 9 | chr22:33407400-33417000 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
| 10 | chr22:33410400-33417200 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
| 11 | chr22:33414000-33414800 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
| 12 | chr22:33414200-33414800 | Enhancers | Primary B cells from peripheral blood | blood |
