Variant report

Variant	rs73164336
Chromosome Location	chr22:33501709-33501710
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr22:33501703-33501848	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr22:33501473-33501910	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr22:33501479-33501809	MCF10A-Er-Src	breast:	n/a	n/a
4	CEBPB	chr22:33501529-33501717	IMR90	lung:	n/a	n/a
5	FOS	chr22:33501455-33501834	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr22:33501500-33501826	MCF10A-Er-Src	breast:	n/a	n/a
7	MYC	chr22:33501475-33501910	MCF10A-Er-Src	breast:	n/a	n/a
8	STAT3	chr22:33501476-33501945	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr22:33501445-33501956	MCF10A-Er-Src	breast:	n/a	n/a
10	FOS	chr22:33501475-33501857	MCF10A-Er-Src	breast:	n/a	n/a
11	MYC	chr22:33501455-33501907	MCF10A-Er-Src	breast:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SYN3-2	chr22:33501369-33501719	ENSG00000228622

Variant related genes	Relation type
ENSG00000231253	TF binding region

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs137551	1.00[EUR][1000 genomes]
rs137553	1.00[EUR][1000 genomes]
rs183588	1.00[EUR][1000 genomes]
rs241875	1.00[EUR][1000 genomes]
rs55676703	1.00[EUR][1000 genomes]
rs55718026	1.00[EUR][1000 genomes]
rs55756736	1.00[EUR][1000 genomes]
rs55793030	1.00[EUR][1000 genomes]
rs55828224	1.00[EUR][1000 genomes]
rs55893006	1.00[EUR][1000 genomes]
rs56151696	1.00[EUR][1000 genomes]
rs56220039	1.00[EUR][1000 genomes]
rs56235324	1.00[EUR][1000 genomes]
rs56249635	1.00[EUR][1000 genomes]
rs56377603	1.00[EUR][1000 genomes]
rs73162009	1.00[EUR][1000 genomes]
rs73162011	1.00[EUR][1000 genomes]
rs73162012	1.00[EUR][1000 genomes]
rs73162016	1.00[EUR][1000 genomes]
rs73162022	1.00[EUR][1000 genomes]
rs73162023	1.00[EUR][1000 genomes]
rs73162031	1.00[EUR][1000 genomes]
rs73162035	1.00[EUR][1000 genomes]
rs73162036	1.00[EUR][1000 genomes]
rs73162038	1.00[EUR][1000 genomes]
rs73162044	1.00[EUR][1000 genomes]
rs73162046	1.00[EUR][1000 genomes]
rs73162047	1.00[EUR][1000 genomes]
rs73162050	1.00[EUR][1000 genomes]
rs73162053	1.00[EUR][1000 genomes]
rs73162057	1.00[EUR][1000 genomes]
rs73162059	1.00[EUR][1000 genomes]
rs73162062	1.00[EUR][1000 genomes]
rs73162063	1.00[EUR][1000 genomes]
rs73162065	1.00[EUR][1000 genomes]
rs73162069	1.00[EUR][1000 genomes]
rs73162072	1.00[EUR][1000 genomes]
rs73162073	1.00[EUR][1000 genomes]
rs73162074	1.00[EUR][1000 genomes]
rs73162075	1.00[EUR][1000 genomes]
rs73162076	1.00[EUR][1000 genomes]
rs73162077	1.00[EUR][1000 genomes]
rs73162081	1.00[EUR][1000 genomes]
rs73162084	1.00[EUR][1000 genomes]
rs73162087	1.00[EUR][1000 genomes]
rs73162088	1.00[EUR][1000 genomes]
rs73162092	1.00[EUR][1000 genomes]
rs73162094	1.00[EUR][1000 genomes]
rs73162095	1.00[EUR][1000 genomes]
rs73162097	1.00[EUR][1000 genomes]
rs73162098	1.00[EUR][1000 genomes]
rs80694	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv948523	chr22:33414164-34098417	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1067068	chr22:33452180-33851033	Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33499800-33502000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr22:33501200-33502000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr22:33501200-33502000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr22:33501200-33502000	Enhancers	Fetal Brain Male	brain
5	chr22:33501200-33502000	Enhancers	Fetal Brain Female	brain
6	chr22:33501200-33502200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr22:33501200-33502200	Enhancers	NHEK	skin
8	chr22:33501200-33502400	Enhancers	HMEC	breast
9	chr22:33501400-33502000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr22:33501400-33502000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr22:33501400-33502000	Enhancers	NHDF-Ad	bronchial
12	chr22:33501400-33502200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr22:33501600-33501800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr22:33501600-33502000	Bivalent Enhancer	Adipose Nuclei	Adipose
15	chr22:33501600-33502200	Enhancers	Brain Hippocampus Middle	brain

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