Variant report

Variant	rs73162023
Chromosome Location	chr22:33353913-33353914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs137551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs137553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs183588	1.00[EUR][1000 genomes]
rs241875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55676703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55718026	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55756736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55793030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55828224	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55893006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56070943	1.00[EUR][1000 genomes]
rs56151696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56220039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56235324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56249635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56373657	1.00[AMR][1000 genomes]
rs56377603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73158330	1.00[EUR][1000 genomes]
rs73158350	1.00[EUR][1000 genomes]
rs73162009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162011	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162044	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162048	1.00[AMR][1000 genomes]
rs73162050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162088	1.00[EUR][1000 genomes]
rs73162092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162096	1.00[AMR][1000 genomes]
rs73162097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73164309	1.00[AMR][1000 genomes]
rs73164336	1.00[EUR][1000 genomes]
rs80694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33343200-33372600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr22:33344200-33360400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr22:33347600-33360600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr22:33347800-33357400	Weak transcription	Brain Anterior Caudate	brain
6	chr22:33348000-33382400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr22:33351600-33360600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr22:33352600-33354200	Enhancers	Rectal Smooth Muscle	rectum
9	chr22:33352600-33354400	Enhancers	Fetal Intestine Small	intestine
10	chr22:33352600-33354400	Enhancers	Placenta	Placenta
11	chr22:33352600-33354800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr22:33352600-33355200	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr22:33352800-33354000	Enhancers	Fetal Brain Male	brain
14	chr22:33352800-33354000	Enhancers	Fetal Brain Female	brain
15	chr22:33352800-33354200	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr22:33352800-33354200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr22:33352800-33354400	Enhancers	Colon Smooth Muscle	Colon
18	chr22:33352800-33354400	Enhancers	Fetal Muscle Leg	muscle
19	chr22:33352800-33354400	Enhancers	Right Ventricle	heart
20	chr22:33352800-33355400	Enhancers	Fetal Stomach	stomach
21	chr22:33353000-33354000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
22	chr22:33353000-33354000	Enhancers	Fetal Intestine Large	intestine
23	chr22:33353000-33354000	Enhancers	Fetal Muscle Trunk	muscle
24	chr22:33353000-33354200	Enhancers	Esophagus	oesophagus
25	chr22:33353000-33354200	Enhancers	Placenta Amnion	Placenta Amnion
26	chr22:33353000-33354400	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr22:33353000-33354400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr22:33353000-33354400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr22:33353000-33354400	Enhancers	Adipose Nuclei	Adipose
30	chr22:33353000-33354400	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr22:33353000-33354400	Enhancers	Fetal Kidney	kidney
32	chr22:33353000-33354400	Enhancers	Left Ventricle	heart
33	chr22:33353000-33354400	Enhancers	Lung	lung
34	chr22:33353000-33354600	Enhancers	Fetal Lung	lung
35	chr22:33353200-33354000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr22:33353200-33354200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr22:33353200-33354200	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr22:33353200-33354400	Enhancers	Spleen	Spleen
39	chr22:33353200-33355000	Enhancers	Fetal Heart	heart
40	chr22:33353200-33355000	Enhancers	Right Atrium	heart
41	chr22:33353400-33354200	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr22:33353600-33354200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr22:33353800-33354000	Enhancers	Brain Angular Gyrus	brain
44	chr22:33353800-33354000	Enhancers	Brain Hippocampus Middle	brain
45	chr22:33353800-33354000	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr22:33353800-33354400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr22:33353800-33357000	Weak transcription	HepG2	liver

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