Variant report

Variant	rs7319125
Chromosome Location	chr13:110718365-110718366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16975576	1.00[MEX][hapmap]
rs2391811	1.00[AMR][1000 genomes]
rs57456074	1.00[AMR][1000 genomes]
rs59426857	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs630968	1.00[MEX][hapmap]
rs6492239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6650306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7323726	0.90[AFR][1000 genomes]
rs7337040	1.00[MEX][hapmap]
rs7989379	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs915413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9515140	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9515141	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3442659	chr13:110711145-110747162	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3425970	chr13:110711165-110747132	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110715400-110722200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:110715800-110722200	Weak transcription	HMEC	breast
3	chr13:110716200-110722000	Weak transcription	HSMM	muscle
4	chr13:110716200-110722000	Weak transcription	HSMMtube	muscle
5	chr13:110717800-110723000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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