Variant report

Variant	rs915413
Chromosome Location	chr13:110713817-110713818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2391811	1.00[AMR][1000 genomes]
rs57456074	1.00[AMR][1000 genomes]
rs59426857	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6492239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6650306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7319125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7323726	0.90[AFR][1000 genomes]
rs7989379	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9515140	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9515141	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3442659	chr13:110711145-110747162	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3425970	chr13:110711165-110747132	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110707600-110714600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:110707800-110714200	Weak transcription	HSMMtube	muscle
3	chr13:110708200-110714200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:110709600-110714200	Weak transcription	NHEK	skin
5	chr13:110709600-110714400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:110710000-110714000	Weak transcription	HMEC	breast
7	chr13:110711000-110714800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:110712400-110714000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr13:110713800-110716200	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links