Variant report

Variant	rs7989379
Chromosome Location	chr13:110709483-110709484
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2391811	1.00[AMR][1000 genomes]
rs57456074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59426857	1.00[AMR][1000 genomes]
rs6492239	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6492243	1.00[EUR][1000 genomes]
rs6650306	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7319125	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615218	1.00[EUR][1000 genomes]
rs7991244	1.00[EUR][1000 genomes]
rs915413	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9515140	1.00[AMR][1000 genomes]
rs9515141	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049593	chr13:110615494-110725945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110707600-110714600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:110707800-110714200	Weak transcription	HSMMtube	muscle
3	chr13:110708200-110714200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr13:110708800-110710000	Enhancers	HMEC	breast
5	chr13:110709000-110709600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:110709000-110709600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr13:110709000-110709600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
8	chr13:110709000-110709800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr13:110709200-110709600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:110709200-110709600	Active TSS	Brain Hippocampus Middle	brain
11	chr13:110709200-110709600	Enhancers	NHEK	skin
12	chr13:110709200-110709800	Active TSS	Aorta	Aorta
13	chr13:110709200-110709800	Active TSS	Brain Anterior Caudate	brain
14	chr13:110709400-110709800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:110709400-110710000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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