Variant report

Variant	rs73208153
Chromosome Location	chr12:117776850-117776851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1004355	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12424669	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1552228	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55833023	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55990915	0.91[EUR][1000 genomes]
rs56257650	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9658264	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658265	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658266	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9658267	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9658269	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117771600-117789000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:117773200-117779800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr12:117773600-117780000	Weak transcription	NHEK	skin
4	chr12:117773600-117782600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr12:117776200-117777200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:117776400-117777200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:117776600-117777000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr12:117776600-117777200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr12:117776600-117777200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr12:117776600-117777400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr12:117776600-117777400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr12:117776600-117777400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:117776800-117777200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr12:117776800-117777200	Flanking Active TSS	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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