Variant report

Variant	rs9658269
Chromosome Location	chr12:117770392-117770393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1004355	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12424669	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1552228	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55833023	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55990915	0.96[EUR][1000 genomes]
rs56257650	0.95[EUR][1000 genomes]
rs7314935	1.00[AFR][1000 genomes]
rs73208120	1.00[AFR][1000 genomes]
rs73208153	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9658264	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9658265	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9658266	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9658267	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117728000-117771200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:117739800-117771400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr12:117749400-117770800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:117762200-117771200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:117765000-117773000	Weak transcription	Pancreas	Pancrea
6	chr12:117767200-117770600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:117769200-117770400	Enhancers	A549	lung
8	chr12:117770200-117772800	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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