Variant report

Variant	rs73211892
Chromosome Location	chr12:119529533-119529534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs57934661	1.00[EUR][1000 genomes]
rs59629859	1.00[EUR][1000 genomes]
rs7294852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7295253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7295638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7302987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7305005	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7311040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73211888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73211889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73211891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73211894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73211896	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213708	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213710	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73213712	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213713	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213715	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213727	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73213729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213733	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73213740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213755	1.00[EUR][1000 genomes]
rs73213756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213759	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73213760	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213762	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213764	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213765	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213767	1.00[EUR][1000 genomes]
rs73213768	1.00[EUR][1000 genomes]
rs73213769	0.95[EUR][1000 genomes]
rs7978612	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119521000-119535600	Weak transcription	Fetal Brain Female	brain
2	chr12:119521200-119537400	Weak transcription	Brain Germinal Matrix	brain
3	chr12:119526000-119529600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr12:119526400-119530400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:119527800-119529800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr12:119528000-119530000	Enhancers	Fetal Heart	heart
7	chr12:119528600-119532000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr12:119528600-119534400	Weak transcription	Right Atrium	heart
9	chr12:119528800-119531600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr12:119528800-119534200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr12:119528800-119534200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr12:119529000-119531400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr12:119529000-119531600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr12:119529000-119531800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr12:119529200-119534400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr12:119529400-119529600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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