Variant report

Variant	rs73213715
Chromosome Location	chr12:119536939-119536940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs57934661	1.00[EUR][1000 genomes]
rs59629859	1.00[EUR][1000 genomes]
rs7294852	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7295253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7295638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7302987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7305005	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7311040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73211884	0.83[AFR][1000 genomes]
rs73211888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73211889	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73211891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73211892	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73211894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73211896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213710	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73213712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213722	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213725	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213727	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73213729	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213733	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73213740	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213741	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213743	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213744	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213746	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213752	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213755	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73213756	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213757	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213759	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73213760	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213762	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213764	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213765	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73213767	1.00[EUR][1000 genomes]
rs73213768	1.00[EUR][1000 genomes]
rs73213769	0.95[EUR][1000 genomes]
rs7978612	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv455725	chr12:119532430-119558565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv560395	chr12:119532430-119558565	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119521200-119537400	Weak transcription	Brain Germinal Matrix	brain
2	chr12:119535200-119568800	Weak transcription	Fetal Brain Male	brain
3	chr12:119535400-119539000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr12:119535600-119538000	Strong transcription	Fetal Brain Female	brain

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