Variant report

Variant	rs73213769
Chromosome Location	chr12:119558756-119558757
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr12:119558625-119558801	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000257095	TF binding region
SRRM4	TF binding region

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs57934661	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59629859	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7294852	0.95[EUR][1000 genomes]
rs7295253	0.95[EUR][1000 genomes]
rs7295638	0.95[EUR][1000 genomes]
rs7302987	0.95[EUR][1000 genomes]
rs7305005	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7311040	0.95[EUR][1000 genomes]
rs73211888	0.95[EUR][1000 genomes]
rs73211889	0.95[EUR][1000 genomes]
rs73211891	0.95[EUR][1000 genomes]
rs73211892	0.95[EUR][1000 genomes]
rs73211894	0.95[EUR][1000 genomes]
rs73211896	0.95[EUR][1000 genomes]
rs73213703	0.95[EUR][1000 genomes]
rs73213708	0.95[EUR][1000 genomes]
rs73213710	0.90[EUR][1000 genomes]
rs73213712	0.95[EUR][1000 genomes]
rs73213713	0.95[EUR][1000 genomes]
rs73213715	0.95[EUR][1000 genomes]
rs73213720	0.95[EUR][1000 genomes]
rs73213722	0.95[EUR][1000 genomes]
rs73213725	0.95[EUR][1000 genomes]
rs73213727	0.89[EUR][1000 genomes]
rs73213729	0.95[EUR][1000 genomes]
rs73213733	0.90[EUR][1000 genomes]
rs73213740	0.95[EUR][1000 genomes]
rs73213741	0.95[EUR][1000 genomes]
rs73213743	0.95[EUR][1000 genomes]
rs73213744	0.95[EUR][1000 genomes]
rs73213746	0.95[EUR][1000 genomes]
rs73213752	0.95[EUR][1000 genomes]
rs73213755	0.95[EUR][1000 genomes]
rs73213756	0.95[EUR][1000 genomes]
rs73213757	0.95[EUR][1000 genomes]
rs73213759	0.85[AMR][1000 genomes]
rs73213760	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73213762	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73213764	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73213765	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73213767	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73213768	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7978612	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119535200-119568800	Weak transcription	Fetal Brain Male	brain
2	chr12:119553600-119567600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:119553800-119558800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr12:119553800-119569000	Weak transcription	Brain Angular Gyrus	brain
5	chr12:119555800-119559000	Strong transcription	Brain Germinal Matrix	brain
6	chr12:119558000-119564600	Strong transcription	Fetal Brain Female	brain

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