Variant report

Variant	rs73223294
Chromosome Location	chr4:8509001-8509002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-METTL19-1	chr4:8508555-8509234	ENSG00000205959.3

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10003554	1.00[ASN][1000 genomes]
rs10516192	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11933361	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11938744	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108233	0.89[EUR][1000 genomes]
rs12108264	0.89[EUR][1000 genomes]
rs12108299	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498220	1.00[AMR][1000 genomes]
rs12498652	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12498856	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12499366	1.00[ASN][1000 genomes]
rs12499931	1.00[AMR][1000 genomes]
rs12500106	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500186	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12501889	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12503080	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504157	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12504328	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504709	1.00[ASN][1000 genomes]
rs12504813	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12506061	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12506272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12506429	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12506703	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509044	1.00[ASN][1000 genomes]
rs12509545	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12511417	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12511591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12512006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12512044	1.00[ASN][1000 genomes]
rs12513048	1.00[ASN][1000 genomes]
rs12513296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16842284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16842305	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16842315	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16842316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2386224	1.00[ASN][1000 genomes]
rs2386225	1.00[ASN][1000 genomes]
rs34873641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41264711	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55856487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57229672	1.00[ASN][1000 genomes]
rs59670959	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59872851	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62286004	1.00[ASN][1000 genomes]
rs6447869	1.00[ASN][1000 genomes]
rs66675498	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66794792	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67332046	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67496006	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67901119	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813671	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814866	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6849528	1.00[ASN][1000 genomes]
rs73209462	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73209465	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73209470	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73209473	1.00[ASN][1000 genomes]
rs73209478	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73209480	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73209481	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73209482	1.00[AMR][1000 genomes]
rs73209488	1.00[ASN][1000 genomes]
rs73209489	1.00[ASN][1000 genomes]
rs73209502	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73211306	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73211309	1.00[ASN][1000 genomes]
rs73211315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211334	1.00[ASN][1000 genomes]
rs73211338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211351	0.89[EUR][1000 genomes]
rs73211354	0.89[EUR][1000 genomes]
rs73211357	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211359	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211365	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211373	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211375	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211378	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211388	1.00[EUR][1000 genomes]
rs73211394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73211401	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213403	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213404	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213405	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213406	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213408	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213409	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213410	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213414	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73213420	1.00[EUR][1000 genomes]
rs73213426	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223242	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223246	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223250	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223256	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223257	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223259	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223263	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223264	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223266	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223271	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223275	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73223282	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686550	1.00[ASN][1000 genomes]
rs9761200	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv4224	chr4:8503727-8546462	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3327752	chr4:8507302-8509800	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8501800-8510600	Enhancers	Ovary	ovary
2	chr4:8502800-8512800	Enhancers	Placenta	Placenta
3	chr4:8503600-8509400	Enhancers	Right Ventricle	heart
4	chr4:8503600-8509800	Enhancers	Adipose Nuclei	Adipose
5	chr4:8504200-8509400	Enhancers	Right Atrium	heart
6	chr4:8504200-8510600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr4:8504600-8510800	Enhancers	Fetal Muscle Leg	muscle
8	chr4:8505800-8509600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:8505800-8509800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:8506200-8509600	Enhancers	HSMMtube	muscle
11	chr4:8506400-8509200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr4:8507000-8509200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:8507000-8509800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr4:8507200-8509400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:8507200-8509400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr4:8507200-8512000	Weak transcription	Gastric	stomach
17	chr4:8507400-8509200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr4:8507400-8509400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:8507400-8509400	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:8507400-8509400	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr4:8507600-8509400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr4:8507600-8509400	Enhancers	Fetal Lung	lung
23	chr4:8507600-8509600	Enhancers	Colon Smooth Muscle	Colon
24	chr4:8507800-8509200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:8507800-8509200	Enhancers	Aorta	Aorta
26	chr4:8507800-8509200	Enhancers	Brain Hippocampus Middle	brain
27	chr4:8507800-8509200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr4:8507800-8509200	Enhancers	Brain Substantia Nigra	brain
29	chr4:8507800-8509200	Enhancers	Colonic Mucosa	Colon
30	chr4:8507800-8509200	Enhancers	Left Ventricle	heart
31	chr4:8507800-8509200	Enhancers	NH-A	brain
32	chr4:8507800-8509400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr4:8507800-8509400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:8507800-8509400	Enhancers	Brain Angular Gyrus	brain
35	chr4:8507800-8509400	Enhancers	Brain Anterior Caudate	brain
36	chr4:8507800-8509400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr4:8507800-8509600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr4:8507800-8509600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:8507800-8509600	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr4:8507800-8509600	Enhancers	HSMM	muscle
41	chr4:8507800-8509800	Enhancers	Rectal Smooth Muscle	rectum
42	chr4:8507800-8510000	Enhancers	NHDF-Ad	bronchial
43	chr4:8508000-8509400	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr4:8508000-8509400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:8508000-8509400	Enhancers	Placenta Amnion	Placenta Amnion
46	chr4:8508000-8509600	Enhancers	Muscle Satellite Cultured Cells	--
47	chr4:8508000-8509600	Enhancers	NHLF	lung
48	chr4:8508200-8509200	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr4:8508200-8509400	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr4:8508200-8509400	Enhancers	Psoas Muscle	Psoas

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