Variant report

Variant	rs73228521
Chromosome Location	chr3:111583672-111583673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:111579110..111581393-chr3:111581603..111584247,2	MCF-7	breast:
2	chr3:111580329..111581908-chr3:111582056..111583865,2	MCF-7	breast:
3	chr3:111581231..111584187-chr3:111592422..111594692,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17424938	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17425250	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17490701	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17491175	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55921603	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55954252	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56092121	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56105878	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56343172	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67396907	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6809779	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73226343	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73226349	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73226359	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73226368	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73226399	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73228506	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73228508	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228510	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228514	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228515	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228518	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228530	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228535	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73228543	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73228545	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73228547	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73228550	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73228569	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7340610	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs937557	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111579400-111585000	Weak transcription	Gastric	stomach
2	chr3:111579600-111584800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:111579800-111584400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:111579800-111588400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:111579800-111589000	Weak transcription	Pancreas	Pancrea
6	chr3:111580000-111589200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:111580400-111583800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:111580400-111583800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:111580400-111584200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:111580400-111584600	Enhancers	HepG2	liver
11	chr3:111580600-111584000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:111580600-111584200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:111580600-111584200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
14	chr3:111580600-111584600	Enhancers	Fetal Stomach	stomach
15	chr3:111580600-111585800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:111580800-111584600	Enhancers	NHDF-Ad	bronchial
17	chr3:111580800-111584800	Enhancers	Liver	Liver
18	chr3:111580800-111585200	Enhancers	HMEC	breast
19	chr3:111581000-111584000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:111581200-111584000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:111581400-111584000	Enhancers	Rectal Smooth Muscle	rectum
22	chr3:111581400-111584800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr3:111581400-111586000	Enhancers	Placenta Amnion	Placenta Amnion
24	chr3:111581400-111593800	Weak transcription	Fetal Muscle Trunk	muscle
25	chr3:111581600-111584600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr3:111581600-111584600	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr3:111581600-111584600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:111581800-111583800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr3:111581800-111584600	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr3:111581800-111585600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:111582000-111583800	Enhancers	HSMM	muscle
32	chr3:111582000-111584600	Enhancers	Stomach Mucosa	stomach
33	chr3:111582200-111583800	Active TSS	Right Ventricle	heart
34	chr3:111582200-111584000	Flanking Active TSS	NH-A	brain
35	chr3:111582200-111584200	Enhancers	HSMMtube	muscle
36	chr3:111582200-111585000	Weak transcription	Left Ventricle	heart
37	chr3:111582200-111585000	Weak transcription	Spleen	Spleen
38	chr3:111582200-111585400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:111582200-111585800	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr3:111582200-111586800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr3:111582200-111586800	Weak transcription	Placenta	Placenta
42	chr3:111582200-111593200	Weak transcription	Lung	lung
43	chr3:111582400-111583800	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr3:111582600-111583800	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr3:111582600-111584000	Flanking Active TSS	Osteobl	bone
46	chr3:111582600-111584200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr3:111582800-111584600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr3:111582800-111584600	Enhancers	Fetal Intestine Large	intestine
49	chr3:111583000-111583800	Enhancers	Fetal Heart	heart
50	chr3:111583000-111583800	Weak transcription	Small Intestine	intestine

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