Variant report

Variant	rs17491175
Chromosome Location	chr3:111612367-111612368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111602844..111604644-chr3:111611282..111613281,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17424938	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17425250	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17490701	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55921603	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55954252	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56092121	0.94[EUR][1000 genomes]
rs56105878	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56343172	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67396907	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6809779	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73226343	0.91[EUR][1000 genomes]
rs73226349	0.91[EUR][1000 genomes]
rs73226359	0.94[EUR][1000 genomes]
rs73226368	0.94[EUR][1000 genomes]
rs73226399	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73228506	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73228508	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73228510	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73228514	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73228515	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73228518	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73228521	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73228530	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73228535	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73228543	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73228545	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228550	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228569	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228590	1.00[AFR][1000 genomes]
rs7340610	0.94[EUR][1000 genomes]
rs937557	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111585200-111622000	Weak transcription	HSMMtube	muscle
2	chr3:111591600-111633200	Weak transcription	Fetal Kidney	kidney
3	chr3:111598400-111612600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:111601200-111612400	Strong transcription	NHEK	skin
5	chr3:111601600-111620400	Weak transcription	Fetal Lung	lung
6	chr3:111601800-111620600	Weak transcription	NHDF-Ad	bronchial
7	chr3:111602000-111612400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:111604000-111632200	Weak transcription	Gastric	stomach
9	chr3:111604200-111617400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr3:111604200-111617600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:111604400-111614600	Weak transcription	Fetal Intestine Small	intestine
12	chr3:111604400-111614800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:111604400-111617200	Weak transcription	Fetal Muscle Leg	muscle
14	chr3:111604400-111617400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:111604400-111618000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:111604400-111618200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:111604400-111620600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:111604400-111621600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:111604400-111622000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:111604400-111625600	Weak transcription	Fetal Intestine Large	intestine
21	chr3:111604400-111629400	Weak transcription	Ovary	ovary
22	chr3:111604400-111632200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr3:111604600-111617400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:111604800-111621600	Weak transcription	NHLF	lung
25	chr3:111604800-111622000	Weak transcription	Adipose Nuclei	Adipose
26	chr3:111604800-111632000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr3:111605000-111620400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr3:111605000-111629800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:111605200-111617400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:111605800-111613600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr3:111606400-111617000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr3:111606400-111618400	Weak transcription	Placenta	Placenta
33	chr3:111608800-111615200	Weak transcription	Fetal Stomach	stomach
34	chr3:111609200-111615600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:111609200-111618600	Weak transcription	Hela-S3	cervix
36	chr3:111609400-111617400	Weak transcription	HSMM	muscle
37	chr3:111609400-111622400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr3:111609600-111617200	Weak transcription	Liver	Liver
39	chr3:111609600-111623200	Weak transcription	Fetal Heart	heart
40	chr3:111609800-111623200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr3:111610000-111623200	Weak transcription	Colon Smooth Muscle	Colon
42	chr3:111610200-111617400	Weak transcription	HMEC	breast
43	chr3:111610200-111621600	Weak transcription	Left Ventricle	heart
44	chr3:111610200-111622200	Weak transcription	Lung	lung
45	chr3:111610200-111627400	Weak transcription	Aorta	Aorta
46	chr3:111611000-111615600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:111611000-111617400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:111611000-111622000	Weak transcription	Right Ventricle	heart
49	chr3:111611200-111615800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr3:111611400-111615800	Weak transcription	Osteobl	bone

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