Variant report

Variant	rs7340610
Chromosome Location	chr3:111557087-111557088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10755070	0.81[AFR][1000 genomes]
rs1282969	0.81[AFR][1000 genomes]
rs1282971	0.85[AFR][1000 genomes]
rs1282973	0.81[AFR][1000 genomes]
rs1463875	0.81[AFR][1000 genomes]
rs1553226	0.81[AFR][1000 genomes]
rs17424938	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17425250	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17490701	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17491175	0.94[EUR][1000 genomes]
rs55921603	0.96[EUR][1000 genomes]
rs55954252	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56092121	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56105878	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56343172	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67396907	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6809779	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73226343	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226349	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226359	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226368	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226399	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73228506	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73228508	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73228510	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73228514	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73228515	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73228518	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73228521	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73228530	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73228535	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73228543	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73228545	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73228547	0.96[EUR][1000 genomes]
rs73228550	0.96[EUR][1000 genomes]
rs73228569	0.96[EUR][1000 genomes]
rs7616227	0.81[AFR][1000 genomes]
rs937557	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111551400-111564800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:111556800-111557200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:111556800-111557400	Enhancers	Liver	Liver

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