Variant report

Variant	rs7616227
Chromosome Location	chr3:111560536-111560537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1039309	1.00[AMR][1000 genomes]
rs10755070	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12171297	1.00[AMR][1000 genomes]
rs1282969	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282971	0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282973	1.00[AFR][1000 genomes]
rs1352888	1.00[AMR][1000 genomes]
rs1463875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1553226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2055363	1.00[AMR][1000 genomes]
rs28809607	1.00[AMR][1000 genomes]
rs4682064	1.00[AMR][1000 genomes]
rs7340610	0.81[AFR][1000 genomes]
rs7340688	1.00[AMR][1000 genomes]
rs7644889	1.00[AMR][1000 genomes]
rs8179903	1.00[AMR][1000 genomes]
rs937555	1.00[AMR][1000 genomes]
rs937556	0.89[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs937558	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111551400-111564800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:111557400-111564800	Weak transcription	Liver	Liver
4	chr3:111558200-111563600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:111559600-111567400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:111559800-111567200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links