Variant report

Variant	rs937558
Chromosome Location	chr3:111564985-111564986
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1039309	1.00[AMR][1000 genomes]
rs10755070	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12171297	1.00[AMR][1000 genomes]
rs1282969	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282971	0.84[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1282973	0.97[AFR][1000 genomes]
rs1352888	1.00[AMR][1000 genomes]
rs1463875	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1553226	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2055363	1.00[AMR][1000 genomes]
rs28809607	1.00[AMR][1000 genomes]
rs4682064	1.00[AMR][1000 genomes]
rs7340688	1.00[AMR][1000 genomes]
rs7616227	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7644889	1.00[AMR][1000 genomes]
rs8179903	1.00[AMR][1000 genomes]
rs937555	1.00[AMR][1000 genomes]
rs937556	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111559600-111567400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:111559800-111567200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:111563000-111577400	Weak transcription	HepG2	liver
5	chr3:111563600-111568400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:111563800-111571200	Weak transcription	Stomach Mucosa	stomach
7	chr3:111564400-111565400	Enhancers	NHLF	lung
8	chr3:111564400-111565600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:111564400-111567800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:111564400-111568400	Enhancers	NHEK	skin
11	chr3:111564600-111565400	Enhancers	HSMMtube	muscle
12	chr3:111564600-111565400	Enhancers	NHDF-Ad	bronchial
13	chr3:111564600-111565600	Enhancers	HUVEC	blood vessel
14	chr3:111564600-111565800	Enhancers	HSMM	muscle
15	chr3:111564600-111568000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:111564600-111568000	Enhancers	HMEC	breast
17	chr3:111564600-111568400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:111564600-111568400	Enhancers	Hela-S3	cervix
19	chr3:111564800-111566000	Enhancers	Osteobl	bone
20	chr3:111564800-111566200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:111564800-111566200	Enhancers	NH-A	brain
22	chr3:111564800-111567800	Strong transcription	Liver	Liver
23	chr3:111564800-111568200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:111564800-111568200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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