Variant report

Variant	rs73230079
Chromosome Location	chr3:136512498-136512499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10212476	0.90[AMR][1000 genomes]
rs13320485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73230016	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9809686	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9826828	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9833022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136506400-136521000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:136506600-136521000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:136506600-136521200	Weak transcription	Hela-S3	cervix
4	chr3:136508800-136513600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:136511000-136513000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:136511200-136513000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:136511200-136513000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:136511200-136513000	Enhancers	Brain Anterior Caudate	brain
9	chr3:136511200-136513800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:136511200-136514400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr3:136511400-136512800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:136511400-136513800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr3:136511800-136512800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:136511800-136513000	Enhancers	Primary B cells from cord blood	blood
15	chr3:136511800-136513200	Enhancers	Primary hematopoietic stem cells	blood
16	chr3:136512400-136513000	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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