Variant report

Variant	rs9809686
Chromosome Location	chr3:136499506-136499507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10212476	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13320485	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73230016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73230079	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9826420	0.81[AMR][1000 genomes]
rs9826828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9833022	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9880099	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136498000-136502800	Weak transcription	Hela-S3	cervix
2	chr3:136498200-136500400	Weak transcription	Fetal Heart	heart
3	chr3:136498200-136501000	Weak transcription	Spleen	Spleen
4	chr3:136498200-136502000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:136498200-136502400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:136498200-136502400	Weak transcription	A549	lung
7	chr3:136498200-136502600	Weak transcription	NH-A	brain
8	chr3:136498200-136504400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:136498200-136505000	Weak transcription	Osteobl	bone
10	chr3:136498200-136505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:136498400-136502200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:136498400-136502800	Weak transcription	HSMMtube	muscle
13	chr3:136498600-136502600	Weak transcription	HSMM	muscle
14	chr3:136499000-136499600	Enhancers	Fetal Lung	lung
15	chr3:136499000-136500200	Enhancers	Fetal Stomach	stomach
16	chr3:136499200-136500200	Weak transcription	Placenta	Placenta
17	chr3:136499200-136502600	Weak transcription	Aorta	Aorta
18	chr3:136499200-136504400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links