Variant report

Variant	rs73234742
Chromosome Location	chr3:142618697-142618698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:142612125..142613700-chr3:142616630..142618763,2	K562	blood:
2	chr3:142609483..142612071-chr3:142616369..142619084,2	K562	blood:
3	chr3:142617377..142619183-chr3:142718490..142721454,2	K562	blood:

Variant related genes	Relation type
ENSG00000163714	Chromatin interaction
ENSG00000268129	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16852815	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35783198	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55692570	0.97[EUR][1000 genomes]
rs55932307	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56331970	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56389497	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57217609	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57269734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57755508	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59064122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60123913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60582377	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73232757	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73232770	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234726	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234728	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234729	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234730	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234735	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73234739	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234745	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234749	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73234753	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73234765	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv437342	chr3:142605233-142622834	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv437343	chr3:142607487-142622834	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142615600-142623400	Weak transcription	NHDF-Ad	bronchial
2	chr3:142616000-142620800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:142616600-142620800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr3:142616800-142619000	Enhancers	Adipose Nuclei	Adipose
5	chr3:142617200-142621400	Weak transcription	Osteobl	bone
6	chr3:142617800-142619200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:142618000-142623200	Weak transcription	Left Ventricle	heart
8	chr3:142618000-142623400	Weak transcription	Right Atrium	heart
9	chr3:142618000-142628000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links