Variant report
| Variant | rs73239958 |
|---|---|
| Chromosome Location | chr10:55883853-55883854 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 10:55597627-55602376..10:55882057-55892580 | GM12878 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11497831 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11498092 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11498093 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11498094 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12244792 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12249466 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12250085 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12254237 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12261105 | 1.00[AFR][1000 genomes] |
| rs16937926 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16937927 | 1.00[AFR][1000 genomes] |
| rs7084671 | 0.94[AFR][1000 genomes] |
| rs73239941 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73239949 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73239956 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73239959 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73239962 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949692 | chr10:55502542-55893206 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv8667 | chr10:55803106-56022647 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv428557 | chr10:55815334-55988225 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv870252 | chr10:55823123-56029435 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv948730 | chr10:55845301-56093271 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv1035173 | chr10:55847066-56005288 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | nsv467214 | chr10:55881720-55948714 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | nsv430232 | chr10:55883194-56027294 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:55880800-55884000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 2 | chr10:55883800-55884600 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
