Variant report

Variant	rs12254237
Chromosome Location	chr10:55884971-55884972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	10:55597627-55602376..10:55882057-55892580	GM12878	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11004077	1.00[YRI][hapmap]
rs11004084	1.00[YRI][hapmap]
rs11497831	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11498091	1.00[YRI][hapmap]
rs11498092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11498093	0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11498094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244792	0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249466	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250085	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251670	1.00[YRI][hapmap]
rs12253489	1.00[YRI][hapmap]
rs12258457	1.00[YRI][hapmap]
rs12261105	1.00[AFR][1000 genomes]
rs12269221	0.81[YRI][hapmap]
rs16905577	1.00[YRI][hapmap]
rs16905579	1.00[YRI][hapmap]
rs16905582	1.00[YRI][hapmap]
rs16937926	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16937927	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4007243	1.00[YRI][hapmap]
rs7084671	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs73239941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239962	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7898067	1.00[YRI][hapmap]
rs7904666	1.00[YRI][hapmap]
rs7915690	0.85[YRI][hapmap]
rs7915833	1.00[YRI][hapmap]
rs7916842	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv467214	chr10:55881720-55948714	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv430232	chr10:55883194-56027294	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55884000-55885000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:55884000-55885800	Enhancers	NHEK	skin
3	chr10:55884600-55885000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:55884600-55885400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin

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