Variant report

Variant	rs11004077
Chromosome Location	chr10:55873998-55873999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11004084	1.00[YRI][hapmap]
rs11497831	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11498091	1.00[YRI][hapmap]
rs11498092	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11498093	0.93[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11498094	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244792	0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249466	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250085	0.91[ASW][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12251670	1.00[YRI][hapmap]
rs12253489	1.00[YRI][hapmap]
rs12254237	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258457	1.00[YRI][hapmap]
rs12261105	0.99[AFR][1000 genomes]
rs12269221	0.86[YRI][hapmap]
rs16905577	1.00[YRI][hapmap]
rs16905579	1.00[YRI][hapmap]
rs16905582	1.00[YRI][hapmap]
rs16937926	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16937927	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs4007243	1.00[YRI][hapmap]
rs7084671	0.91[ASW][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs73239941	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239949	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239956	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239958	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239959	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239962	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7898067	1.00[YRI][hapmap]
rs7904666	0.91[ASW][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap]
rs7915690	0.85[YRI][hapmap]
rs7915833	0.91[ASW][hapmap];0.97[LWK][hapmap];1.00[YRI][hapmap]
rs7916842	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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