Variant report

Variant	rs73239959
Chromosome Location	chr10:55884199-55884200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11497831	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11498092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11498093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11498094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12244792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12250085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261105	1.00[AFR][1000 genomes]
rs16937926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16937927	1.00[AFR][1000 genomes]
rs7084671	0.94[AFR][1000 genomes]
rs73239941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239949	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73239962	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949692	chr10:55502542-55893206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv8667	chr10:55803106-56022647	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv428557	chr10:55815334-55988225	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1035173	chr10:55847066-56005288	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv467214	chr10:55881720-55948714	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv430232	chr10:55883194-56027294	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55883800-55884600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:55884000-55884600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr10:55884000-55884800	Enhancers	HMEC	breast
4	chr10:55884000-55885000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:55884000-55885800	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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