Variant report

Variant	rs73242006
Chromosome Location	chr10:55296997-55296998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11814685	0.81[AFR][1000 genomes]
rs11817426	1.00[EUR][1000 genomes]
rs12763853	0.81[AFR][1000 genomes]
rs12767289	0.82[AFR][1000 genomes]
rs12771750	0.82[AFR][1000 genomes]
rs12772777	0.85[AFR][1000 genomes]
rs12776740	0.86[AFR][1000 genomes]
rs34476067	0.82[AFR][1000 genomes]
rs35066816	0.82[AFR][1000 genomes]
rs380829	1.00[EUR][1000 genomes]
rs399772	1.00[EUR][1000 genomes]
rs454049	1.00[EUR][1000 genomes]
rs59674074	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60050022	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60402963	1.00[EUR][1000 genomes]
rs6481014	1.00[EUR][1000 genomes]
rs7069859	0.86[AFR][1000 genomes]
rs7070023	0.82[AFR][1000 genomes]
rs7070911	0.82[AFR][1000 genomes]
rs7071194	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7074549	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7079557	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7082821	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7082930	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7083182	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7083591	0.82[AFR][1000 genomes]
rs7085026	0.85[AFR][1000 genomes]
rs7086598	0.82[AFR][1000 genomes]
rs7086889	0.82[AFR][1000 genomes]
rs7087312	0.82[AFR][1000 genomes]
rs7094553	1.00[EUR][1000 genomes]
rs7098021	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7100090	1.00[EUR][1000 genomes]
rs7101316	0.88[AFR][1000 genomes]
rs73231785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73237567	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73237571	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73239805	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73239885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73239887	0.86[AFR][1000 genomes]
rs73345727	1.00[EUR][1000 genomes]
rs73345732	1.00[EUR][1000 genomes]
rs73345748	1.00[EUR][1000 genomes]
rs73345750	1.00[EUR][1000 genomes]
rs73345766	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73345772	1.00[EUR][1000 genomes]
rs73345790	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73347303	1.00[EUR][1000 genomes]
rs73347308	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7342025	1.00[EUR][1000 genomes]
rs7898323	1.00[EUR][1000 genomes]
rs7901162	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7922694	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1048399	chr10:55151470-55313737	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3390330	chr10:55281995-55298396	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55289000-55315600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:55296400-55297200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:55296600-55297600	Enhancers	Liver	Liver

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