Variant report

Variant	rs7898323
Chromosome Location	chr10:55214740-55214741
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11817426	1.00[EUR][1000 genomes]
rs380829	1.00[EUR][1000 genomes]
rs399772	1.00[EUR][1000 genomes]
rs454049	1.00[EUR][1000 genomes]
rs59674074	1.00[EUR][1000 genomes]
rs60050022	1.00[EUR][1000 genomes]
rs60402963	1.00[EUR][1000 genomes]
rs6481014	1.00[EUR][1000 genomes]
rs7071194	1.00[EUR][1000 genomes]
rs7074549	1.00[EUR][1000 genomes]
rs7079557	1.00[EUR][1000 genomes]
rs7082821	1.00[EUR][1000 genomes]
rs7082930	1.00[EUR][1000 genomes]
rs7083182	1.00[EUR][1000 genomes]
rs7094553	1.00[EUR][1000 genomes]
rs7098021	1.00[EUR][1000 genomes]
rs7100090	1.00[EUR][1000 genomes]
rs73231785	1.00[EUR][1000 genomes]
rs73237567	1.00[EUR][1000 genomes]
rs73237571	1.00[EUR][1000 genomes]
rs73239805	1.00[EUR][1000 genomes]
rs73239885	1.00[EUR][1000 genomes]
rs73242006	1.00[EUR][1000 genomes]
rs73345727	1.00[EUR][1000 genomes]
rs73345732	1.00[EUR][1000 genomes]
rs73345748	1.00[EUR][1000 genomes]
rs73345750	1.00[EUR][1000 genomes]
rs73345766	1.00[EUR][1000 genomes]
rs73345772	1.00[EUR][1000 genomes]
rs73345790	1.00[EUR][1000 genomes]
rs73347303	1.00[EUR][1000 genomes]
rs73347308	1.00[EUR][1000 genomes]
rs7342025	1.00[EUR][1000 genomes]
rs7901162	1.00[EUR][1000 genomes]
rs7922694	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1040943	chr10:55040577-55279797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv540630	chr10:55040577-55279797	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1037480	chr10:55102814-55289571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2750963	chr10:55150127-55237139	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2755889	chr10:55150173-55278481	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1048399	chr10:55151470-55313737	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2756288	chr10:55169541-55237139	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv523436	chr10:55198707-55252076	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55213200-55221200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr10:55213600-55222800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:55214200-55217600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:55214600-55214800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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