Variant report

Variant	rs73242909
Chromosome Location	chr8:66708030-66708031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66705648..66708433-chr8:66714425..66716419,2	K562	blood:
2	chr8:66700732..66705237-chr8:66705292..66709207,8	K562	blood:
3	chr8:66707527..66709329-chr8:66752989..66754945,2	K562	blood:

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16932346	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6415604	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6472227	0.88[ASN][1000 genomes]
rs73242913	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73242953	0.82[EUR][1000 genomes]
rs7829484	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793412	chr8:66705321-66761366	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66693000-66708600	Weak transcription	NHDF-Ad	bronchial
2	chr8:66701600-66717000	Weak transcription	Gastric	stomach
3	chr8:66703200-66711800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:66703800-66711200	Weak transcription	Small Intestine	intestine
5	chr8:66703800-66711800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:66706200-66711800	Weak transcription	K562	blood
7	chr8:66706800-66708200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr8:66706800-66708200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr8:66706800-66708200	Flanking Active TSS	HepG2	liver
10	chr8:66707000-66710000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:66707000-66711800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:66707200-66710000	ZNF genes & repeats	GM12878-XiMat	blood
13	chr8:66707200-66712200	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:66707400-66708200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:66707600-66708400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
16	chr8:66707600-66708600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
17	chr8:66707600-66708800	ZNF genes & repeats	Primary B cells from cord blood	blood
18	chr8:66707600-66709400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:66707600-66712200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:66707600-66712400	Weak transcription	Right Atrium	heart
21	chr8:66707800-66708800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
22	chr8:66707800-66709400	Weak transcription	Fetal Thymus	thymus
23	chr8:66707800-66710000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr8:66707800-66710800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr8:66707800-66710800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr8:66707800-66711000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr8:66707800-66711800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr8:66707800-66715000	Weak transcription	Pancreas	Pancrea
29	chr8:66707800-66715200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:66707800-66720200	Weak transcription	Aorta	Aorta
31	chr8:66708000-66708800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr8:66708000-66709000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr8:66708000-66709000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr8:66708000-66709400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr8:66708000-66709400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr8:66708000-66709400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr8:66708000-66709400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr8:66708000-66709400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr8:66708000-66709400	Weak transcription	A549	lung
40	chr8:66708000-66710000	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr8:66708000-66710600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr8:66708000-66710800	Weak transcription	Primary T cells from cord blood	blood
43	chr8:66708000-66711000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr8:66708000-66711800	Weak transcription	Left Ventricle	heart
45	chr8:66708000-66711800	Weak transcription	Stomach Mucosa	stomach
46	chr8:66708000-66711800	Weak transcription	HMEC	breast
47	chr8:66708000-66712400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr8:66708000-66715000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr8:66708000-66715000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr8:66708000-66715000	Weak transcription	Thymus	Thymus

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