Variant report

Variant	rs16932346
Chromosome Location	chr8:66699104-66699105
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66691641..66695119-chr8:66697675..66699405,3	K562	blood:
2	chr8:66697287..66699597-chr8:66938827..66941499,2	MCF-7	breast:
3	chr8:66697439..66699329-chr8:66700344..66702673,3	K562	blood:
4	chr8:66673672..66679496-chr8:66697045..66699845,4	MCF-7	breast:
5	chr8:66695473..66703733-chr8:66751774..66756006,10	K562	blood:

Variant related genes	Relation type
ENSG00000272192	Chromatin interaction
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11782766	0.90[JPT][hapmap]
rs11995869	0.81[CEU][hapmap]
rs1877640	0.90[JPT][hapmap]
rs2063685	0.90[JPT][hapmap]
rs35688380	0.81[CEU][hapmap]
rs3935203	0.81[CEU][hapmap]
rs6415604	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6472222	0.90[JPT][hapmap]
rs6472225	0.90[JPT][hapmap]
rs6472226	0.81[JPT][hapmap]
rs6472227	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs6996048	0.81[CEU][hapmap]
rs7001138	0.81[CEU][hapmap]
rs7005571	1.00[CHB][hapmap]
rs7014676	0.90[JPT][hapmap]
rs73242909	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73242913	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73242953	0.82[EUR][1000 genomes]
rs7821744	1.00[CHB][hapmap]
rs7828699	0.90[JPT][hapmap]
rs7829484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs972362	0.90[JPT][hapmap]
rs974149	0.90[JPT][hapmap]

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66678600-66701400	Weak transcription	Ovary	ovary
2	chr8:66688200-66706200	Weak transcription	Brain Anterior Caudate	brain
3	chr8:66689200-66707200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:66690600-66702400	Weak transcription	Esophagus	oesophagus
5	chr8:66691000-66702200	Weak transcription	Spleen	Spleen
6	chr8:66691000-66702400	Weak transcription	Colonic Mucosa	Colon
7	chr8:66691200-66702000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:66691600-66699400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:66691600-66699400	Weak transcription	Fetal Kidney	kidney
10	chr8:66693000-66708600	Weak transcription	NHDF-Ad	bronchial
11	chr8:66693600-66701200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr8:66693600-66701200	Weak transcription	Gastric	stomach
13	chr8:66693600-66702200	Weak transcription	Pancreas	Pancrea
14	chr8:66693600-66703800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:66693600-66704800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr8:66693600-66707400	Weak transcription	Placenta	Placenta
17	chr8:66693800-66701000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:66693800-66701200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:66693800-66701200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:66693800-66701200	Weak transcription	Fetal Stomach	stomach
21	chr8:66693800-66701400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr8:66693800-66701400	Weak transcription	Brain Hippocampus Middle	brain
23	chr8:66693800-66704800	Weak transcription	HSMMtube	muscle
24	chr8:66693800-66707400	Weak transcription	Aorta	Aorta
25	chr8:66694000-66701000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr8:66694000-66701000	Weak transcription	Colon Smooth Muscle	Colon
27	chr8:66694000-66701200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr8:66694200-66699600	Weak transcription	Fetal Lung	lung
29	chr8:66694200-66701000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:66694200-66701200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr8:66694200-66701400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr8:66694200-66702200	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr8:66694200-66702200	Weak transcription	HepG2	liver
34	chr8:66694400-66699400	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr8:66694400-66699800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr8:66694400-66703600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr8:66694400-66705200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr8:66694600-66701000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr8:66694800-66701000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr8:66694800-66701200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr8:66694800-66702200	Weak transcription	Adipose Nuclei	Adipose
42	chr8:66695000-66700400	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr8:66695600-66703000	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr8:66695600-66707800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr8:66695800-66699200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr8:66696000-66699200	Weak transcription	Fetal Heart	heart
47	chr8:66696000-66702000	Weak transcription	Thymus	Thymus
48	chr8:66696000-66702400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr8:66696000-66702800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr8:66696000-66703200	Weak transcription	Primary monocytes fromperipheralblood	blood

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