Variant report

Variant	rs972362
Chromosome Location	chr8:66691934-66691935
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66691641..66695119-chr8:66697675..66699405,3	K562	blood:
2	chr8:66687566..66690238-chr8:66691841..66694498,3	K562	blood:
3	chr8:66689911..66693837-chr8:66694545..66697182,4	K562	blood:
4	chr8:66688789..66692346-chr8:66692358..66695249,3	MCF-7	breast:
5	chr8:66689911..66692422-chr8:66694322..66696808,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11782766	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513723	0.93[CEU][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs16932346	0.90[JPT][hapmap]
rs1877640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2063685	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28501341	0.92[CEU][hapmap];0.94[YRI][hapmap]
rs56139500	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs57463822	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6415604	0.90[JPT][hapmap]
rs6472222	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6472225	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6472226	0.93[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6472227	0.81[JPT][hapmap]
rs67441920	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7014676	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7828699	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7829484	0.81[JPT][hapmap]
rs974149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66647800-66695200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:66674200-66695000	Weak transcription	Brain Angular Gyrus	brain
3	chr8:66678600-66701400	Weak transcription	Ovary	ovary
4	chr8:66686000-66694400	ZNF genes & repeats	GM12878-XiMat	blood
5	chr8:66686200-66693800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:66686200-66693800	ZNF genes & repeats	Primary B cells from cord blood	blood
7	chr8:66687000-66693200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:66687000-66693600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr8:66687000-66693600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:66687000-66693600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:66687000-66694200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:66687200-66693200	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr8:66687200-66693400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr8:66687200-66693800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:66687200-66694200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:66687600-66693800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
17	chr8:66688000-66693000	Weak transcription	Psoas Muscle	Psoas
18	chr8:66688200-66694200	Strong transcription	Fetal Lung	lung
19	chr8:66688200-66706200	Weak transcription	Brain Anterior Caudate	brain
20	chr8:66688400-66693400	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr8:66688400-66693400	Weak transcription	Placenta	Placenta
22	chr8:66688600-66694000	Strong transcription	Duodenum Mucosa	Duodenum
23	chr8:66688600-66695200	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr8:66689000-66694800	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr8:66689200-66693400	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr8:66689200-66694200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:66689200-66695400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr8:66689200-66695600	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr8:66689200-66707200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr8:66689600-66694800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr8:66689800-66693800	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr8:66689800-66694000	Strong transcription	K562	blood
33	chr8:66689800-66694200	Strong transcription	Brain Substantia Nigra	brain
34	chr8:66690000-66693800	Strong transcription	Brain Hippocampus Middle	brain
35	chr8:66690000-66694000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:66690200-66692200	ZNF genes & repeats	Dnd41	blood
37	chr8:66690400-66692000	Strong transcription	Fetal Heart	heart
38	chr8:66690400-66692200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
39	chr8:66690400-66694200	Strong transcription	Fetal Intestine Large	intestine
40	chr8:66690600-66702400	Weak transcription	Esophagus	oesophagus
41	chr8:66690800-66692800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr8:66690800-66693000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr8:66690800-66693000	Strong transcription	Left Ventricle	heart
44	chr8:66690800-66693000	Strong transcription	NHDF-Ad	bronchial
45	chr8:66690800-66693200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr8:66690800-66693400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
47	chr8:66690800-66693800	Strong transcription	HSMM	muscle
48	chr8:66690800-66694200	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr8:66690800-66694600	Strong transcription	Fetal Brain Female	brain
50	chr8:66690800-66694800	Strong transcription	HUES64 Cell Line	embryonic stem cell

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