Variant report

Variant	rs56139500
Chromosome Location	chr8:66683836-66683837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11782766	0.92[ASN][1000 genomes]
rs1877640	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2063685	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57463822	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6472221	0.80[EUR][1000 genomes]
rs6472222	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6472225	0.85[ASN][1000 genomes]
rs6472226	0.83[ASN][1000 genomes]
rs67441920	0.92[ASN][1000 genomes]
rs7000292	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7014676	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7828699	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs972362	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs974149	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66645600-66686000	Weak transcription	HSMM	muscle
2	chr8:66647800-66695200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr8:66649000-66690200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:66651600-66690200	Weak transcription	NH-A	brain
5	chr8:66654600-66690200	Weak transcription	Lung	lung
6	chr8:66656400-66687800	Weak transcription	Pancreas	Pancrea
7	chr8:66657000-66685000	Weak transcription	Fetal Intestine Large	intestine
8	chr8:66658600-66686000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:66658600-66687800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr8:66659800-66687400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr8:66662800-66690200	Weak transcription	HepG2	liver
12	chr8:66665400-66687800	Strong transcription	Fetal Thymus	thymus
13	chr8:66667400-66687800	Strong transcription	Dnd41	blood
14	chr8:66668200-66686200	Weak transcription	Liver	Liver
15	chr8:66668600-66685600	Weak transcription	Adipose Nuclei	Adipose
16	chr8:66669400-66687800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr8:66670800-66687400	Weak transcription	Brain Germinal Matrix	brain
18	chr8:66671400-66687200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr8:66671400-66687800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr8:66671400-66690200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr8:66671800-66687000	Weak transcription	Fetal Brain Female	brain
22	chr8:66671800-66687800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:66671800-66689800	Weak transcription	K562	blood
24	chr8:66671800-66690200	Weak transcription	Gastric	stomach
25	chr8:66672000-66686200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr8:66674000-66687000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr8:66674200-66684600	Weak transcription	NHDF-Ad	bronchial
28	chr8:66674200-66687000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:66674200-66687800	Weak transcription	Aorta	Aorta
30	chr8:66674200-66695000	Weak transcription	Brain Angular Gyrus	brain
31	chr8:66674600-66687000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:66674600-66687200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr8:66674600-66690000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr8:66674800-66687000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr8:66674800-66687800	Weak transcription	Brain Hippocampus Middle	brain
36	chr8:66674800-66687800	Weak transcription	HSMMtube	muscle
37	chr8:66675800-66687000	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr8:66676000-66687600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr8:66676400-66687800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr8:66676600-66684800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr8:66677000-66687000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:66677200-66685400	Weak transcription	HUVEC	blood vessel
43	chr8:66677200-66687000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr8:66677200-66687400	Weak transcription	Fetal Heart	heart
45	chr8:66677400-66686200	Weak transcription	Fetal Lung	lung
46	chr8:66677400-66690400	Weak transcription	Right Ventricle	heart
47	chr8:66677800-66687000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr8:66677800-66687600	Strong transcription	Primary B cells from peripheral blood	blood
49	chr8:66678000-66684600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr8:66678000-66690200	Weak transcription	Small Intestine	intestine

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