Variant report

Variant	rs1877640
Chromosome Location	chr8:66687386-66687387
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11782766	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513723	0.93[CEU][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes]
rs16932346	0.90[JPT][hapmap]
rs2063685	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28501341	0.92[CEU][hapmap];0.94[YRI][hapmap]
rs56139500	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs57463822	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6415604	0.90[JPT][hapmap]
rs6472222	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6472225	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6472226	0.93[CEU][hapmap];0.89[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6472227	0.81[JPT][hapmap]
rs67441920	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7014676	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7828699	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7829484	0.81[JPT][hapmap]
rs972362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs974149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66647800-66695200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:66649000-66690200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:66651600-66690200	Weak transcription	NH-A	brain
4	chr8:66654600-66690200	Weak transcription	Lung	lung
5	chr8:66656400-66687800	Weak transcription	Pancreas	Pancrea
6	chr8:66658600-66687800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:66659800-66687400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr8:66662800-66690200	Weak transcription	HepG2	liver
9	chr8:66665400-66687800	Strong transcription	Fetal Thymus	thymus
10	chr8:66667400-66687800	Strong transcription	Dnd41	blood
11	chr8:66669400-66687800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:66670800-66687400	Weak transcription	Brain Germinal Matrix	brain
13	chr8:66671400-66687800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr8:66671400-66690200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:66671800-66687800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:66671800-66689800	Weak transcription	K562	blood
17	chr8:66671800-66690200	Weak transcription	Gastric	stomach
18	chr8:66674200-66687800	Weak transcription	Aorta	Aorta
19	chr8:66674200-66695000	Weak transcription	Brain Angular Gyrus	brain
20	chr8:66674600-66690000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr8:66674800-66687800	Weak transcription	Brain Hippocampus Middle	brain
22	chr8:66674800-66687800	Weak transcription	HSMMtube	muscle
23	chr8:66676000-66687600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr8:66676400-66687800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr8:66677200-66687400	Weak transcription	Fetal Heart	heart
26	chr8:66677400-66690400	Weak transcription	Right Ventricle	heart
27	chr8:66677800-66687600	Strong transcription	Primary B cells from peripheral blood	blood
28	chr8:66678000-66690200	Weak transcription	Small Intestine	intestine
29	chr8:66678600-66687600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr8:66678600-66701400	Weak transcription	Ovary	ovary
31	chr8:66680400-66687800	Weak transcription	Psoas Muscle	Psoas
32	chr8:66680400-66690200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr8:66680600-66687400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr8:66680800-66687400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr8:66680800-66687800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr8:66680800-66687800	Weak transcription	Fetal Intestine Small	intestine
37	chr8:66680800-66687800	Weak transcription	Fetal Stomach	stomach
38	chr8:66680800-66687800	Weak transcription	Thymus	Thymus
39	chr8:66680800-66690400	Weak transcription	Spleen	Spleen
40	chr8:66682000-66687600	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr8:66682400-66687600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr8:66682800-66687800	Weak transcription	Left Ventricle	heart
43	chr8:66683200-66687800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr8:66683400-66687800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr8:66683400-66687800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr8:66684200-66687600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:66684200-66690200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr8:66684800-66690800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr8:66685000-66687600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr8:66685000-66687600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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