Variant report

Variant	rs67441920
Chromosome Location	chr8:66720238-66720239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66702126..66703869-chr8:66718028..66720489,2	K562	blood:
2	chr8:66630735..66632714-chr8:66718636..66720891,2	K562	blood:
3	chr8:66711497..66714228-chr8:66717933..66720911,3	MCF-7	breast:
4	chr8:66720162..66723066-chr8:66729017..66730753,2	MCF-7	breast:
5	chr8:66718426..66720371-chr8:66722752..66725233,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11782766	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1513723	0.81[EUR][1000 genomes]
rs1877640	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2063685	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs56139500	0.92[ASN][1000 genomes]
rs57463822	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6472222	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6472225	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6472226	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7014676	0.84[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7828699	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs972362	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs974149	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793412	chr8:66705321-66761366	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66711000-66721600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr8:66711000-66722400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:66713400-66738200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:66713800-66721000	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr8:66714200-66723400	Weak transcription	Brain Germinal Matrix	brain
6	chr8:66714800-66734400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:66715000-66720400	ZNF genes & repeats	GM12878-XiMat	blood
8	chr8:66715400-66723400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:66716000-66721400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:66716000-66721800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr8:66716000-66721800	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr8:66716200-66738400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:66716400-66723600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:66716600-66721400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr8:66716600-66723200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:66717200-66720400	Enhancers	NHEK	skin
17	chr8:66717200-66730600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:66717400-66720400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr8:66717400-66720400	Enhancers	HMEC	breast
20	chr8:66717400-66730600	Weak transcription	A549	lung
21	chr8:66717600-66723000	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr8:66717800-66720400	Enhancers	Fetal Heart	heart
23	chr8:66717800-66720400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr8:66718000-66723400	Weak transcription	Pancreas	Pancrea
25	chr8:66718200-66720400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:66718200-66721800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr8:66718200-66723200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:66718200-66723400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr8:66718200-66731600	Weak transcription	Stomach Mucosa	stomach
30	chr8:66718600-66723400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr8:66718800-66720400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr8:66718800-66721800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr8:66719000-66730800	Weak transcription	Ovary	ovary
34	chr8:66719200-66723000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr8:66719200-66723200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr8:66719200-66723400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr8:66719200-66723400	Weak transcription	Liver	Liver
38	chr8:66719200-66729400	Weak transcription	K562	blood
39	chr8:66719200-66730800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:66719200-66730800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr8:66719200-66734200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr8:66719400-66720600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr8:66719400-66720800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr8:66719400-66721000	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr8:66719400-66722200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr8:66719400-66723400	Weak transcription	Fetal Thymus	thymus
47	chr8:66719400-66724000	Weak transcription	Colon Smooth Muscle	Colon
48	chr8:66719400-66738600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr8:66719400-66750000	Weak transcription	Hela-S3	cervix
50	chr8:66719800-66720400	Enhancers	H1 Cell Line	embryonic stem cell

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