Variant report

Variant	rs2063685
Chromosome Location	chr8:66686087-66686088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10504392	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs11782766	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1316700	0.92[CEU][hapmap];0.91[GIH][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.88[EUR][1000 genomes]
rs1513723	0.83[JPT][hapmap]
rs16932346	0.90[JPT][hapmap]
rs1877640	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28501341	0.84[CHD][hapmap];0.85[GIH][hapmap];0.82[MEX][hapmap];0.94[YRI][hapmap]
rs56139500	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57463822	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415604	0.90[JPT][hapmap]
rs6472221	0.81[CEU][hapmap]
rs6472222	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6472225	0.89[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6472226	0.89[CHB][hapmap];0.83[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.88[YRI][hapmap];0.87[ASN][1000 genomes]
rs6472227	0.81[JPT][hapmap]
rs67441920	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7000292	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7014676	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7828699	0.86[ASW][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7829484	0.81[JPT][hapmap]
rs972362	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs974149	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2063685	DNAJC5B	cis	lymphoblastoid	seeQTL
rs2063685	MTFR1	cis	cerebellum	SCAN

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66647800-66695200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:66649000-66690200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:66651600-66690200	Weak transcription	NH-A	brain
4	chr8:66654600-66690200	Weak transcription	Lung	lung
5	chr8:66656400-66687800	Weak transcription	Pancreas	Pancrea
6	chr8:66658600-66687800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:66659800-66687400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr8:66662800-66690200	Weak transcription	HepG2	liver
9	chr8:66665400-66687800	Strong transcription	Fetal Thymus	thymus
10	chr8:66667400-66687800	Strong transcription	Dnd41	blood
11	chr8:66668200-66686200	Weak transcription	Liver	Liver
12	chr8:66669400-66687800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr8:66670800-66687400	Weak transcription	Brain Germinal Matrix	brain
14	chr8:66671400-66687200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:66671400-66687800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr8:66671400-66690200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:66671800-66687000	Weak transcription	Fetal Brain Female	brain
18	chr8:66671800-66687800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:66671800-66689800	Weak transcription	K562	blood
20	chr8:66671800-66690200	Weak transcription	Gastric	stomach
21	chr8:66672000-66686200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr8:66674000-66687000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:66674200-66687000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:66674200-66687800	Weak transcription	Aorta	Aorta
25	chr8:66674200-66695000	Weak transcription	Brain Angular Gyrus	brain
26	chr8:66674600-66687000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:66674600-66687200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr8:66674600-66690000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr8:66674800-66687000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr8:66674800-66687800	Weak transcription	Brain Hippocampus Middle	brain
31	chr8:66674800-66687800	Weak transcription	HSMMtube	muscle
32	chr8:66675800-66687000	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr8:66676000-66687600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr8:66676400-66687800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr8:66677000-66687000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr8:66677200-66687000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr8:66677200-66687400	Weak transcription	Fetal Heart	heart
38	chr8:66677400-66686200	Weak transcription	Fetal Lung	lung
39	chr8:66677400-66690400	Weak transcription	Right Ventricle	heart
40	chr8:66677800-66687000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:66677800-66687600	Strong transcription	Primary B cells from peripheral blood	blood
42	chr8:66678000-66690200	Weak transcription	Small Intestine	intestine
43	chr8:66678600-66686400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr8:66678600-66687600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr8:66678600-66701400	Weak transcription	Ovary	ovary
46	chr8:66679800-66687000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr8:66680400-66687000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr8:66680400-66687800	Weak transcription	Psoas Muscle	Psoas
49	chr8:66680400-66690200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr8:66680600-66687200	Weak transcription	Fetal Muscle Leg	muscle

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