Variant report

Variant	rs73242953
Chromosome Location	chr8:66761146-66761147
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16932325	0.84[ASN][1000 genomes]
rs16932346	0.82[EUR][1000 genomes]
rs1877639	0.92[ASN][1000 genomes]
rs57016390	0.92[ASN][1000 genomes]
rs6415604	0.90[AMR][1000 genomes]
rs73242909	0.82[EUR][1000 genomes]
rs73242913	0.82[EUR][1000 genomes]
rs73242918	0.92[ASN][1000 genomes]
rs73242920	0.92[ASN][1000 genomes]
rs73242955	1.00[ASN][1000 genomes]
rs7829484	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793412	chr8:66705321-66761366	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv611456	chr8:66759626-66772558	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66760600-66761200	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr8:66760600-66761400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:66760800-66761200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:66760800-66761200	Enhancers	Primary B cells from peripheral blood	blood
5	chr8:66760800-66761200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:66760800-66761200	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr8:66761000-66766000	Weak transcription	GM12878-XiMat	blood
8	chr8:66761000-66767000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr8:66761000-66769600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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