Variant report

Variant	rs11995869
Chromosome Location	chr8:66795808-66795809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66753416..66755184-chr8:66793890..66796299,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction
ENSG00000272192	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11987232	0.83[ASN][1000 genomes]
rs11994535	1.00[ASN][1000 genomes]
rs11995215	0.87[EUR][1000 genomes]
rs11996963	0.81[EUR][1000 genomes]
rs16932346	0.81[CEU][hapmap]
rs16932394	0.85[JPT][hapmap]
rs16932396	0.82[JPT][hapmap]
rs16932422	1.00[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs16932423	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs16932440	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16932441	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17396192	0.89[CEU][hapmap]
rs2357662	1.00[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs34178379	1.00[ASN][1000 genomes]
rs35688380	1.00[CEU][hapmap]
rs3922725	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3922726	1.00[ASN][1000 genomes]
rs3935203	1.00[CEU][hapmap]
rs55636103	1.00[ASN][1000 genomes]
rs56200451	1.00[ASN][1000 genomes]
rs57033118	1.00[ASN][1000 genomes]
rs57896411	0.83[ASN][1000 genomes]
rs58122259	1.00[ASN][1000 genomes]
rs58407124	1.00[ASN][1000 genomes]
rs58556742	0.89[ASN][1000 genomes]
rs58681615	1.00[ASN][1000 genomes]
rs59321109	1.00[ASN][1000 genomes]
rs59342909	0.80[ASN][1000 genomes]
rs59436889	1.00[ASN][1000 genomes]
rs59587921	0.80[ASN][1000 genomes]
rs60107801	0.80[ASN][1000 genomes]
rs60109751	1.00[ASN][1000 genomes]
rs60866025	0.89[ASN][1000 genomes]
rs61492394	1.00[ASN][1000 genomes]
rs6980631	1.00[ASN][1000 genomes]
rs6996048	1.00[CEU][hapmap]
rs6999945	1.00[ASN][1000 genomes]
rs7001138	1.00[CEU][hapmap]
rs7001442	0.85[JPT][hapmap]
rs7006472	1.00[ASN][1000 genomes]
rs7010977	1.00[ASN][1000 genomes]
rs7011003	1.00[ASN][1000 genomes]
rs7014758	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];1.00[ASN][1000 genomes]
rs73242974	0.81[EUR][1000 genomes]
rs73242990	0.81[EUR][1000 genomes]
rs73244828	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73247098	1.00[ASN][1000 genomes]
rs73248906	1.00[ASN][1000 genomes]
rs73248909	1.00[ASN][1000 genomes]
rs73248984	1.00[ASN][1000 genomes]
rs73252340	0.83[ASN][1000 genomes]
rs7463507	1.00[ASN][1000 genomes]
rs7813023	1.00[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7814441	1.00[ASN][1000 genomes]
rs7815318	1.00[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7815325	1.00[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7824102	0.80[ASN][1000 genomes]
rs7829484	0.81[CEU][hapmap]
rs7833724	1.00[ASN][1000 genomes]
rs9298108	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs953177	1.00[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs9694791	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66792400-66801000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr8:66794200-66799000	Weak transcription	Primary B cells from peripheral blood	blood

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