Variant report

Variant	rs6980631
Chromosome Location	chr8:66807106-66807107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11987232	0.83[ASN][1000 genomes]
rs11994535	1.00[ASN][1000 genomes]
rs11995869	1.00[ASN][1000 genomes]
rs12114361	0.81[AFR][1000 genomes]
rs16932422	0.83[ASN][1000 genomes]
rs16932423	0.83[ASN][1000 genomes]
rs16932440	0.83[ASN][1000 genomes]
rs2357662	0.83[ASN][1000 genomes]
rs34178379	1.00[ASN][1000 genomes]
rs3922725	1.00[ASN][1000 genomes]
rs3922726	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55636103	1.00[ASN][1000 genomes]
rs56200451	1.00[ASN][1000 genomes]
rs56784317	0.84[AFR][1000 genomes]
rs57033118	1.00[ASN][1000 genomes]
rs57688867	0.86[AFR][1000 genomes]
rs57896411	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58122259	1.00[ASN][1000 genomes]
rs58407124	1.00[ASN][1000 genomes]
rs58556742	0.89[ASN][1000 genomes]
rs58681615	1.00[ASN][1000 genomes]
rs59321109	1.00[ASN][1000 genomes]
rs59342909	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59436889	1.00[ASN][1000 genomes]
rs59587921	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60107801	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60109751	1.00[ASN][1000 genomes]
rs60866025	0.89[ASN][1000 genomes]
rs61492394	1.00[ASN][1000 genomes]
rs6999945	1.00[ASN][1000 genomes]
rs7005571	0.81[AFR][1000 genomes]
rs7006472	1.00[ASN][1000 genomes]
rs7010977	1.00[ASN][1000 genomes]
rs7011003	1.00[ASN][1000 genomes]
rs7014758	1.00[ASN][1000 genomes]
rs73244828	0.80[ASN][1000 genomes]
rs73247098	1.00[ASN][1000 genomes]
rs73248906	1.00[ASN][1000 genomes]
rs73248909	1.00[ASN][1000 genomes]
rs73248984	1.00[ASN][1000 genomes]
rs73252340	0.83[ASN][1000 genomes]
rs7463507	1.00[ASN][1000 genomes]
rs7813023	0.83[ASN][1000 genomes]
rs7814441	1.00[ASN][1000 genomes]
rs7815318	0.83[ASN][1000 genomes]
rs7815325	0.83[ASN][1000 genomes]
rs7824102	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7833724	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836663	0.86[AFR][1000 genomes]
rs9298108	0.83[ASN][1000 genomes]
rs953177	0.83[ASN][1000 genomes]
rs9694791	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66801200-66810800	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links