Variant report

Variant	rs7813023
Chromosome Location	chr8:66948049-66948050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66743264..66756293-chr8:66938648..66949139,49	MCF-7	breast:
2	chr8:66947493..66949829-chr8:67023657..67026093,2	K562	blood:
3	chr8:66946238..66950362-chr8:67025196..67028717,4	MCF-7	breast:
4	chr8:66947582..66951459-chr8:67339934..67342685,5	MCF-7	breast:
5	chr8:66673165..66677231-chr8:66944474..66948432,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction
ENSG00000147576	Chromatin interaction
ENSG00000253190	Chromatin interaction
ENSG00000272192	Chromatin interaction
ENSG00000246145	Chromatin interaction
ENSG00000179041	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11987232	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11994535	0.83[ASN][1000 genomes]
rs11995869	1.00[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs16932391	0.89[EUR][1000 genomes]
rs16932394	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs16932396	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs16932415	0.87[CEU][hapmap]
rs16932422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16932423	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16932424	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs16932436	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16932440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932441	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2357662	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs34178379	0.83[ASN][1000 genomes]
rs3922725	0.83[ASN][1000 genomes]
rs3922726	0.83[ASN][1000 genomes]
rs4636189	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs55636103	0.83[ASN][1000 genomes]
rs56200451	0.83[ASN][1000 genomes]
rs57033118	0.83[ASN][1000 genomes]
rs57633306	0.83[EUR][1000 genomes]
rs57896411	1.00[ASN][1000 genomes]
rs58122259	0.83[ASN][1000 genomes]
rs58165070	0.94[ASN][1000 genomes]
rs58407124	0.83[ASN][1000 genomes]
rs58556742	0.84[ASN][1000 genomes]
rs58681615	0.83[ASN][1000 genomes]
rs59321109	0.83[ASN][1000 genomes]
rs59436889	0.83[ASN][1000 genomes]
rs60109751	0.83[ASN][1000 genomes]
rs60866025	0.84[ASN][1000 genomes]
rs61038961	0.87[EUR][1000 genomes]
rs61492394	0.83[ASN][1000 genomes]
rs6980631	0.83[ASN][1000 genomes]
rs6985305	0.85[EUR][1000 genomes]
rs6990185	0.85[EUR][1000 genomes]
rs6990672	0.85[EUR][1000 genomes]
rs6998320	0.89[EUR][1000 genomes]
rs6999945	0.83[ASN][1000 genomes]
rs7001192	0.89[EUR][1000 genomes]
rs7001442	0.87[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs7005571	0.85[JPT][hapmap]
rs7006472	0.83[ASN][1000 genomes]
rs7010453	0.85[EUR][1000 genomes]
rs7010977	0.83[ASN][1000 genomes]
rs7011003	0.83[ASN][1000 genomes]
rs7014758	0.87[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7016261	0.89[EUR][1000 genomes]
rs7017603	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs73247098	0.83[ASN][1000 genomes]
rs73248906	0.83[ASN][1000 genomes]
rs73248909	0.83[ASN][1000 genomes]
rs73248984	0.83[ASN][1000 genomes]
rs73252340	1.00[ASN][1000 genomes]
rs7463507	0.83[ASN][1000 genomes]
rs7814441	0.83[ASN][1000 genomes]
rs7815318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815325	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7827556	1.00[CEU][hapmap]
rs7833724	0.83[ASN][1000 genomes]
rs9298108	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs953177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9693171	0.89[EUR][1000 genomes]
rs9693187	0.89[EUR][1000 genomes]
rs9694791	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66939600-66952800	Weak transcription	Psoas Muscle	Psoas
2	chr8:66942000-66948200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:66945600-66951200	Weak transcription	Pancreas	Pancrea
4	chr8:66946000-66948600	Weak transcription	GM12878-XiMat	blood
5	chr8:66946000-66949000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:66946000-66949000	Weak transcription	Dnd41	blood
7	chr8:66946000-66951000	Weak transcription	Stomach Mucosa	stomach
8	chr8:66946200-66948600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr8:66946400-66948400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:66946400-66948600	Weak transcription	Brain Anterior Caudate	brain
11	chr8:66946400-66948600	Weak transcription	Osteobl	bone
12	chr8:66946400-66948800	Weak transcription	Fetal Thymus	thymus
13	chr8:66946400-66949400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:66946400-66955000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr8:66946600-66948400	Weak transcription	Hela-S3	cervix
16	chr8:66946600-66948600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:66946600-66948600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr8:66946600-66948600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr8:66946600-66948600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr8:66946600-66948600	Weak transcription	NHEK	skin
21	chr8:66946600-66953800	Weak transcription	NHDF-Ad	bronchial
22	chr8:66946600-66954000	Weak transcription	HMEC	breast
23	chr8:66946800-66948600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr8:66947000-66954000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr8:66947800-66948400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:66948000-66948800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr8:66948000-66951400	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links