Variant report

Variant	rs7017603
Chromosome Location	chr8:66954550-66954551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr8:66954198-66954678	MCF10A-Er-Src	breast:	n/a	chr8:66954660-66954672
2	FOS	chr8:66954210-66954637	MCF10A-Er-Src	breast:	n/a	n/a
3	MYC	chr8:66954355-66954641	MCF10A-Er-Src	breast:	n/a	n/a
4	FOXA2	chr8:66954245-66954840	A549	lung:	n/a	n/a
5	FOS	chr8:66954367-66954578	MCF10A-Er-Src	breast:	n/a	n/a
6	CEBPB	chr8:66954178-66954725	IMR90	lung:	n/a	n/a
7	FOS	chr8:66954248-66954648	MCF10A-Er-Src	breast:	n/a	n/a
8	FOSL2	chr8:66954134-66954654	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66753081..66754975-chr8:66954019..66955590,2	MCF-7	breast:

Variant related genes	Relation type
DNAJC5B	TF binding region
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11987232	0.85[EUR][1000 genomes]
rs16932391	0.81[EUR][1000 genomes]
rs16932396	0.81[EUR][1000 genomes]
rs16932422	1.00[CEU][hapmap]
rs16932423	1.00[CEU][hapmap]
rs16932424	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16932436	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16932440	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs16932441	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4636189	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs61038961	0.82[EUR][1000 genomes]
rs6985305	0.81[EUR][1000 genomes]
rs6988654	0.86[AFR][1000 genomes]
rs6990185	0.81[EUR][1000 genomes]
rs6990672	0.81[EUR][1000 genomes]
rs6998320	0.81[EUR][1000 genomes]
rs7001192	0.81[EUR][1000 genomes]
rs7001442	0.81[EUR][1000 genomes]
rs7010453	0.81[EUR][1000 genomes]
rs7016261	0.81[EUR][1000 genomes]
rs7813023	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7815318	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7827556	1.00[CEU][hapmap]
rs953177	1.00[CEU][hapmap]
rs9693171	0.81[EUR][1000 genomes]
rs9693187	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66946400-66955000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr8:66949800-66958000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:66950400-66958000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:66953000-66955000	Weak transcription	Psoas Muscle	Psoas
5	chr8:66954000-66954600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:66954000-66954600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:66954000-66954600	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
8	chr8:66954000-66954600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:66954000-66954600	Enhancers	GM12878-XiMat	blood
10	chr8:66954000-66954600	Enhancers	HMEC	breast
11	chr8:66954000-66954600	Flanking Active TSS	NHDF-Ad	bronchial
12	chr8:66954000-66954600	Flanking Active TSS	Osteobl	bone
13	chr8:66954000-66954800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:66954000-66954800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:66954000-66955200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr8:66954200-66954600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:66954200-66954600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:66954200-66954600	Enhancers	Duodenum Mucosa	Duodenum
19	chr8:66954200-66954600	Active TSS	A549	lung
20	chr8:66954200-66954600	Active TSS	NHLF	lung
21	chr8:66954200-66955400	Weak transcription	Gastric	stomach
22	chr8:66954400-66954600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:66954400-66954600	Active TSS	NH-A	brain
24	chr8:66954400-66955000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:66954400-66955400	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr8:66954400-66955800	Enhancers	Stomach Mucosa	stomach

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