Variant report

Variant	rs16932436
Chromosome Location	chr8:66948506-66948507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:66743264..66756293-chr8:66938648..66949139,49	MCF-7	breast:
2	chr8:66674019..66674547-chr8:66948440..66949127,2	MCF-7	breast:
3	chr8:66947493..66949829-chr8:67023657..67026093,2	K562	blood:
4	chr8:66946238..66950362-chr8:67025196..67028717,4	MCF-7	breast:
5	chr8:66947582..66951459-chr8:67339934..67342685,5	MCF-7	breast:
6	chr8:66673923..66674780-chr8:66948473..66949128,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272192	Chromatin interaction
ENSG00000246145	Chromatin interaction
ENSG00000147576	Chromatin interaction
ENSG00000179041	Chromatin interaction
ENSG00000205268	Chromatin interaction
ENSG00000253190	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16932394	0.87[CEU][hapmap]
rs16932415	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs16932422	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs16932423	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs16932424	1.00[CEU][hapmap]
rs16932440	1.00[CEU][hapmap]
rs4636189	1.00[CEU][hapmap]
rs7001442	0.87[CEU][hapmap]
rs7014758	0.87[CEU][hapmap]
rs7017603	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7813023	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7815318	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7815325	0.87[CEU][hapmap]
rs7827556	1.00[CEU][hapmap]
rs953177	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv3414665	chr8:66936816-67381935	Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66939600-66952800	Weak transcription	Psoas Muscle	Psoas
2	chr8:66945600-66951200	Weak transcription	Pancreas	Pancrea
3	chr8:66946000-66948600	Weak transcription	GM12878-XiMat	blood
4	chr8:66946000-66949000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:66946000-66949000	Weak transcription	Dnd41	blood
6	chr8:66946000-66951000	Weak transcription	Stomach Mucosa	stomach
7	chr8:66946200-66948600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr8:66946400-66948600	Weak transcription	Brain Anterior Caudate	brain
9	chr8:66946400-66948600	Weak transcription	Osteobl	bone
10	chr8:66946400-66948800	Weak transcription	Fetal Thymus	thymus
11	chr8:66946400-66949400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:66946400-66955000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr8:66946600-66948600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:66946600-66948600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr8:66946600-66948600	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr8:66946600-66948600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr8:66946600-66948600	Weak transcription	NHEK	skin
18	chr8:66946600-66953800	Weak transcription	NHDF-Ad	bronchial
19	chr8:66946600-66954000	Weak transcription	HMEC	breast
20	chr8:66946800-66948600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr8:66947000-66954000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:66948000-66948800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:66948000-66951400	Enhancers	A549	lung
24	chr8:66948200-66948800	Enhancers	Placenta Amnion	Placenta Amnion
25	chr8:66948400-66948800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:66948400-66948800	Enhancers	Placenta	Placenta
27	chr8:66948400-66949200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:66948400-66949400	Enhancers	Hela-S3	cervix

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