Variant report

Variant	rs7815325
Chromosome Location	chr8:66883408-66883409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66753145..66757110-chr8:66882241..66886071,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction
ENSG00000272192	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs11987232	1.00[ASN][1000 genomes]
rs11994535	0.83[ASN][1000 genomes]
rs11995869	1.00[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs16932389	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs16932394	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs16932396	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16932415	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]
rs16932422	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932423	0.87[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16932424	0.87[CEU][hapmap]
rs16932436	0.87[CEU][hapmap]
rs16932440	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16932441	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2357662	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28671004	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34178379	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3922725	0.83[ASN][1000 genomes]
rs3922726	0.83[ASN][1000 genomes]
rs3923558	0.85[EUR][1000 genomes]
rs4636189	0.87[CEU][hapmap]
rs55636103	0.83[ASN][1000 genomes]
rs56200451	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57033118	0.83[ASN][1000 genomes]
rs57633306	0.80[EUR][1000 genomes]
rs57896411	1.00[ASN][1000 genomes]
rs58122259	0.83[ASN][1000 genomes]
rs58165070	0.94[ASN][1000 genomes]
rs58407124	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58423697	0.83[EUR][1000 genomes]
rs58556742	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58607438	0.80[EUR][1000 genomes]
rs58681615	0.83[ASN][1000 genomes]
rs59321109	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59436889	0.83[ASN][1000 genomes]
rs60109751	0.83[ASN][1000 genomes]
rs60866025	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60924938	0.83[EUR][1000 genomes]
rs61038961	0.80[EUR][1000 genomes]
rs61357987	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61492394	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6980631	0.83[ASN][1000 genomes]
rs6981048	0.89[EUR][1000 genomes]
rs6985305	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6989783	0.85[EUR][1000 genomes]
rs6990185	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6990672	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6999945	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7001442	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7005571	0.85[JPT][hapmap]
rs7006472	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7009416	0.83[EUR][1000 genomes]
rs7010453	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7010977	0.83[ASN][1000 genomes]
rs7011003	0.83[ASN][1000 genomes]
rs7014758	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73237254	0.83[EUR][1000 genomes]
rs73237256	0.83[EUR][1000 genomes]
rs73237268	0.83[EUR][1000 genomes]
rs73237302	0.85[EUR][1000 genomes]
rs73247098	0.83[ASN][1000 genomes]
rs73248906	0.83[ASN][1000 genomes]
rs73248909	0.83[ASN][1000 genomes]
rs73248984	0.83[ASN][1000 genomes]
rs73252340	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7463507	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7463565	0.87[EUR][1000 genomes]
rs7813023	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7814441	0.83[ASN][1000 genomes]
rs7815318	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7821744	0.85[JPT][hapmap]
rs7827556	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs7833724	0.83[ASN][1000 genomes]
rs9298108	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs953177	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs9694791	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1023239	chr8:66775321-66904124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66873600-66887400	Weak transcription	Thymus	Thymus
2	chr8:66873800-66890600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr8:66877800-66886200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr8:66877800-66886400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr8:66878200-66884800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:66878600-66886200	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr8:66878800-66884600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr8:66878800-66893600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr8:66880000-66884800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:66880000-66885000	Weak transcription	HMEC	breast
11	chr8:66880000-66885200	Weak transcription	NHDF-Ad	bronchial
12	chr8:66881000-66885200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:66881200-66883800	Enhancers	Hela-S3	cervix
14	chr8:66881800-66886200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr8:66882400-66884200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr8:66882400-66885200	Weak transcription	Esophagus	oesophagus
17	chr8:66882400-66885400	Weak transcription	A549	lung
18	chr8:66883000-66883600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr8:66883200-66884000	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr8:66883400-66883800	Enhancers	Fetal Thymus	thymus

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